Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAMMA-VPE.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32940 742 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 698 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT1G62710 540 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT3G20210 478 / 3e-166 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 99 / 2e-22 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G059400 [exp] 877 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 558 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 548 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.008G003400 [exp] 521 / 0 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 100 / 5e-23 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007450 [exp] 776 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 732 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 548 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 546 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10033344 [exp] 468 / 6e-162 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 257 / 4e-82 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 99 / 5e-25 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 101 / 3e-23 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 100 / 7e-23 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 64 / 8e-11 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.006G232900.2 pacid=42768445 polypeptide=Potri.006G232900.2.p locus=Potri.006G232900 ID=Potri.006G232900.2.v4.1 annot-version=v4.1 ATGACGCGACTCATTGCCGGCGTAATTTTTCTTCTTATTTCTTTCTGTGGTATCGCCGTCGGTGTCCGAGACATCGTTGGTGACGTTCTCCGGTTGCCAT CGGAGGCTTCTAGGTTTTTCCGTCCCGGTAAATTTAATGATGATAATAGTGATGATGATTCTTCCGGAACTAGATGGGCCATCTTGCTTGCCGGATCTAA CGGTTACTGGAATTACCGGCACCAGGCAGATGTTTGTCATGCATATCAACTGCTGAGACAAGGTGGATTGAAAGAAGAAAATATAATAGTTTTCATGTAC GATGACATTGCTGATAACCCAGAGAACCCAAGGCCTGGAGTCATCATCAACAATCCCCAAGGAGAAGATGTTTATAAAGGAGTTCCAAAGGATTATACTG GTCCAGATGTCACCGTTGGAAACTTTTTTGCGGCTATCCTTGGAAACAAGACAGCTCTTACCGGGGGCAGTGGAAAAGTTATTGATAGTGGGCCCAATGA CCATATTTTCATTTATTATACTGATCATGGAGGTCCTGGGGTGCTAGGGATGCCTACCAATCCTTACCTTTATGCGGATGATTTGATTGATGTCTTAAAA AAGAAGCATGCATCCGGAACCTATAAAAGCTTGGTGTTTTATCTTGAAGCCTGTGAATCCGGAAGCATCTTTGAGGGTCTTCTTCCTCAAGGTCTAAATA TCTATGCAACCACAGCATCAAATGCAGAAGAGAGCAGTTGGGGAACCTATTGTCCTGGAGAGTATCCTAGCCCTCCCCCAGAATACGAAACTTGTTTGGG TGACTTGTACAGTGTTGCTTGGATGGAGGATAGTGACATACACAATTTACGGACAGAAACTCTGCACCAGCAATATGAACTGGTAAAAAGGAGGACTTCC TATGACAATTCTCCCTACGGTTCCCATGTCATGCAATATGGTGATGTTGGACTTAGCAAGGACGACCTCTTCCAGTATATGGGTACAAACCCTGCAAATG ATAACTACACTTTCGTGGAGGAGAACTCCTTGAGGCCACATTCTAAAGTTGTTAATCAGCGTGATGCTGATCTCGTCCACTTCTGGACTAAGTACCGCAA GGCCCCAGAAGGCTCTTCTAGGAAGGTTGAAGCTCAGAAGCAGTTTGTTGAAGCAATGTCACATAGAATGCATATTGACCACAGCATAAAACTTATTGGG AAGCTCCTCTTTGGAATTGAAAAGGCCTCAGAGGTATTGAACACCGTACGTCCTGCTGGGCAACCTCTTGTTGATGACTGGGTCTGCCTTAAGACACTGG TGAGGACTTTTGAAACACACTGTGGATCCATATCGCAGTATGGGATGAAACACATGCGATCTCTTGCAAACCTTTGCAATGCCGGAATTGTAAAGGAACA GATGGCCGAGGCATCAGCACAAGCTTGTGTAAGCTTTCCTTCTGGTTCATGGAGCTCTCTTCACAAAGGGTTCAGCGCCTAA
AA sequence Show only first row Show all	>Potri.006G232900.2 pacid=42768445 polypeptide=Potri.006G232900.2.p locus=Potri.006G232900 ID=Potri.006G232900.2.v4.1 annot-version=v4.1 MTRLIAGVIFLLISFCGIAVGVRDIVGDVLRLPSEASRFFRPGKFNDDNSDDDSSGTRWAILLAGSNGYWNYRHQADVCHAYQLLRQGGLKEENIIVFMY DDIADNPENPRPGVIINNPQGEDVYKGVPKDYTGPDVTVGNFFAAILGNKTALTGGSGKVIDSGPNDHIFIYYTDHGGPGVLGMPTNPYLYADDLIDVLK KKHASGTYKSLVFYLEACESGSIFEGLLPQGLNIYATTASNAEESSWGTYCPGEYPSPPPEYETCLGDLYSVAWMEDSDIHNLRTETLHQQYELVKRRTS YDNSPYGSHVMQYGDVGLSKDDLFQYMGTNPANDNYTFVEENSLRPHSKVVNQRDADLVHFWTKYRKAPEGSSRKVEAQKQFVEAMSHRMHIDHSIKLIG KLLFGIEKASEVLNTVRPAGQPLVDDWVCLKTLVRTFETHCGSISQYGMKHMRSLANLCNAGIVKEQMAEASAQACVSFPSGSWSSLHKGFSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Potri.006G232900 [exp]	0	1	Pt-GAMMA-VPE.2
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	12.08	0.8802
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.013G109500 [exp]	14.00	0.8677	SAT.2
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	14.89	0.8681
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.015G147600 [exp]	16.91	0.8799
AT1G02260			Divalent ion symporter (.1)		Potri.017G141650 [exp]	17.02	0.8690
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Potri.004G138300 [exp]	20.24	0.8590	SPK.2
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151232 [exp]	25.84	0.8709
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	29.66	0.8511
AT1G02260			Divalent ion symporter (.1)		Potri.017G141600 [exp]	36.63	0.8569
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	40.24	0.8455

Compare expression of checked genes

Potri.006G232900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.