Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49601 203 / 3e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000736 [exp] 276 / 5e-81 AT3G49601 207 / 2e-57 unknown protein Lus10008501 [exp] 268 / 6e-77 AT3G49601 209 / 2e-57 unknown protein Lus10034691 [exp] 73 / 2e-15 AT3G49601 61 / 7e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G233000.3 pacid=42770390 polypeptide=Potri.006G233000.3.p locus=Potri.006G233000 ID=Potri.006G233000.3.v4.1 annot-version=v4.1 ATGTATAACGGAATCGGGTTACAGACCCCGAGGGGGTCGGGTACAAACGGTTATATCCAAACAAACAAGTTTTTCGTGAGGCCGAGAACCGGCAAGGTAG CACATGATACTAAGGGTTTCGAGGGAGATCAGGGGACTGGTGGGATTACCAAGAAACCCAATAAGGAAATTCTTGAGCATGATCGCAAGCGGCAAATTCA GCTCAAGCTTGTTGTGCTTGAAGACAAGCTGATTGAACAAGGATATACTGATGCTGAGATTGAAGAGAAGCTTCAGGAAGCTAGGAAGACTTTGGAAGCT GCATCCGAAGAGAGTGGGGGACTTACTGCCTCTGACACAAAGGTTTCAGATACGCAGTCCCATCAAATTGCTGCTAGGAAGGAAAAACAAATGGAAACAT TAAGGGCTGCTCTTGGTATACGAATGTCTGAACCAGATGAACAAGGCATTGATGGGACTGATGATGAACTAAGAAATAGTCGGAAGAATGACCCAGGTGA AGGAAGCAAGTGGAGTGAGAAACATGAACATGCCTTTTTGGATAGAGAGTTCACCCGCAAGAAACATGTGGCTGAAGATCTTGAAGTTGAGAAGGATGAA AATAAAAAGGGTGTTAAAGCCTTGAAAAATAAGAAGAAAGAAGATGAGTTTGACGAGTCAAGGCACCACCGGAAGGAAGAAAGCAGGAAGAGAAGGCATC GGGATGATTCTTCTGATACAGATAGCAGTGGGAAGCATGCTAAAGGAAGTCGCAAGAAGCATAGTAAAGGTAGACGAGGAAGGGATCATGAAACTGAAAG TGATTCTGACCATGGCAAGAAGAAGAGAACATCGACGAAGCACAAGAAAAGCAGAAGACATGACAGTGGAAGTGATGATTCTGCTACTGATGACGAGACC GATTCCGACCATGGCAAGAAGAAGAGCAGAATTTCTGAGAAACTCAAGAAAAGCAGAAGATCTGGTGATAGTGATGATTCTGCTACTGATGATGCGGATG ATGTTGGCCTGGTTAATCTGCATCAGGAAGTTGAGAAACACAAGAAATCTCGTGCAAGGCATGACTCTGATGATAATTCTGGTTTTAATGATCGTTGGAA TGGTGACGGCAGTAGACATGGGAATGGTCGCAGAATCAGTGAAGGTGATAGTGAATCCGATCTCAACAAAGTAGGAAAGCATAGAAGGGAATTGACAAGT AGGAGTCACAAAAGGAATGATAGTGATTCTGATGGTAGTGGTGATGAGAAATTAGAGAAAATTAGAAGTAGGAGGAGGCATGATAGTGATGAAGAAGATC CTGATACAGTTTATGGTAGGAAAGGGAAGAAAATTGTTGAGGAGATGCGAGGTTCTCTGAAAGATGATAGTGATGATAGCAAGAGCACTGATTCTGACAG CAGTGCTAGTGATGATGGGCATGGGAAAGCCATGAAGAAAAATCTCCTAGACAAAAGTGGACGTGGAGATCACAGGCAGATAATTGACAAGAAGCTAGAT TCTCTGGATGATGTCAGTGAGGATAGCAGGAGAAGCAGTGATTCTGGCAGCAGTGGTAGTGATTACAGACATGGAAAACCTGTGAAAAAGACTCCTGCTG ATAAAAACAGAAGTGGAGGGGGGGATGGTGGTTATAACAAAGGTGGTCGAAGTGGTCGTGAATCCTTTCTAGAAGAGAAGGGTTCTAGACCTGCTGATCT TGGCCGTGGTGATAGACCCAGAGAACTGTACCAATCTTGTAGAGAAGCTGTGGACAAAACCAACCTTGATATTCAAGCAACGGGGAGGAACAAAAGGAAA CTTGATGATTCAACTAAGGATGAGGAGCATGAATCAAAGTCAAGAAATCGAACAGTTGGAAAAGAGGAAGGGCATGACATTGATCGTAGAGCATATCAAA GTAAGGATGATCAGAGGGGTGATTCTTCTAAATTGGTTAGATCCAGAGGGCGTGATGATGATGTTGGAGATACACGTAAAGAAGATGAACCACGACGTGG AAGTAGGAATGATCAAGAATACAAAGAGCGTGGAGGGGAGAAAAGACATGCCAGGGATGAGGAGGATCATAGAGGGAGAAGATACCAGAGATATGAAGAA GAGGACGATGACTACAGAAGGCATGGAAAGAATGAGGTAGATCAGCGATATGGAAGTAGAAGGCACGGAAGAGGGGAGAAAGAAGAGCAAGGAAGTAGAG GTCATGAGAGGGACAAGCAGATAGATCACTCCAAGAGGTCTAGATATGACGATTCTCGTTTTAGTGAGAGGAAACGGTATGAAAATGACAAGCGTGATGA TGATCGAGTCAGATATAGAGATTAA
AA sequence Show only first row Show all	>Potri.006G233000.3 pacid=42770390 polypeptide=Potri.006G233000.3.p locus=Potri.006G233000 ID=Potri.006G233000.3.v4.1 annot-version=v4.1 MYNGIGLQTPRGSGTNGYIQTNKFFVRPRTGKVAHDTKGFEGDQGTGGITKKPNKEILEHDRKRQIQLKLVVLEDKLIEQGYTDAEIEEKLQEARKTLEA ASEESGGLTASDTKVSDTQSHQIAARKEKQMETLRAALGIRMSEPDEQGIDGTDDELRNSRKNDPGEGSKWSEKHEHAFLDREFTRKKHVAEDLEVEKDE NKKGVKALKNKKKEDEFDESRHHRKEESRKRRHRDDSSDTDSSGKHAKGSRKKHSKGRRGRDHETESDSDHGKKKRTSTKHKKSRRHDSGSDDSATDDET DSDHGKKKSRISEKLKKSRRSGDSDDSATDDADDVGLVNLHQEVEKHKKSRARHDSDDNSGFNDRWNGDGSRHGNGRRISEGDSESDLNKVGKHRRELTS RSHKRNDSDSDGSGDEKLEKIRSRRRHDSDEEDPDTVYGRKGKKIVEEMRGSLKDDSDDSKSTDSDSSASDDGHGKAMKKNLLDKSGRGDHRQIIDKKLD SLDDVSEDSRRSSDSGSSGSDYRHGKPVKKTPADKNRSGGGDGGYNKGGRSGRESFLEEKGSRPADLGRGDRPRELYQSCREAVDKTNLDIQATGRNKRK LDDSTKDEEHESKSRNRTVGKEEGHDIDRRAYQSKDDQRGDSSKLVRSRGRDDDVGDTRKEDEPRRGSRNDQEYKERGGEKRHARDEEDHRGRRYQRYEE EDDDYRRHGKNEVDQRYGSRRHGRGEKEEQGSRGHERDKQIDHSKRSRYDDSRFSERKRYENDKRDDDRVRYRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49601			unknown protein		Potri.006G233000 [exp]	0	1
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	1.00	0.9362
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	2.00	0.8790
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	2.44	0.8891
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	4.24	0.8574
AT3G58110			unknown protein		Potri.013G119700 [exp]	5.00	0.8752
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	5.74	0.8543
AT2G06040			unknown protein		Potri.006G220600 [exp]	6.16	0.8429
AT5G08450			unknown protein		Potri.018G145560 [exp]	7.48	0.8476
AT4G10600			RING/FYVE/PHD zinc finger supe...		Potri.001G448900 [exp]	8.06	0.8489
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	8.48	0.8726

Compare expression of checked genes

Potri.006G233000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.