Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18200 466 / 2e-165 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034400 [exp] 566 / 0 AT5G18200 414 / 4e-145 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016535 [exp] 416 / 4e-146 AT5G18200 434 / 1e-153 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1) Lus10040803 [exp] 350 / 3e-121 AT5G18200 363 / 2e-126 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [poplar] [flax] HIT PF01087 [poplar] [flax] GalP_UDP_transf Galactose-1-phosphate uridyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G233200.1 pacid=42769728 polypeptide=Potri.006G233200.1.p locus=Potri.006G233200 ID=Potri.006G233200.1.v4.1 annot-version=v4.1 ATGGCATCACAACATCAAAACGGTGGTCGGAGCCCCGAACTTAGGCACGATCCAGTAACAAACCGATGGGTCATTTTCTCACCTGCCCGTGCAAAAAGAC CCACTGATTTTAAATCAAAAAACCCTCAAAACCCCAACCCCAACAACAATTCCTTATGCCCTTTCTGCATCGGCAACGAGCATGAGTGTGCGCCCGAGAT CTTCCGAGTCCCACCCGACCTGAATGACCCGAATTGGAAACTCCGGGTCATTGAGAATCTCTACCCTGCCCTGAGCAGAAATCTTGAGTGCCCATGTGAG GAAAAGCAGGGCATGGAGTTTCCAGGTCGGGTCATTGGAGGTTTTGGGTTTCACGATGTGGTGATAGAGAATCCAGTTCATTCGGTCCAGCTAAGTGATA TGGAGCCGAGAGAGATTGGTGAAGTTTTTTTGGCTCATAAGAAGAGGATTCAGCAGATTATGAGTGTTCAATCCATTAAATACGTGCAGGTGTTCAAGAA CCACGGCGCATCTGCTGGAGCATCGATGAGTCATTCTCATAGCCAGATACTGGCTCTTCCCGTTATTCCTTCATCAGTTTCTGCTCGACTTGAGGGCATG AAGGAGTACTTTGAAAAGACTGGAAAATGCAGTCTCTGTGAAGTTCGAGCAAAAGAACTCGTGATTGATGAATCATCCCATTTTATATCCATTGTTCCTT TTGCTGCCACATTCCCTTTTGAGATATGGATTATTCCCAGGGTTCACTCTTCTCATTTCCATGAACTTGATTTTGAGAAGATGGTTGATCTCGGCGGATT GCTGAAGCTCATGCTTAGGAAGATTTCTCTACAGTTGAACAACCCACCATTTAACTTCATGATCCAGACTTCTCCCGTTCAGATTAAAGAATCAGAATCA TGTTATACTCACTGGTTCTTACAGATAGTCCCTCAATTAAGTGGGGTTGGGGGTTTTGAAATTGGAACTGGTTGTTACATAAATCCTGTTTTGCCCGAGG ATGCTGCAAAAGTTATGAGGGAAGTTAATCTTCCAATGCAGGATTGA
AA sequence Show only first row Show all	>Potri.006G233200.1 pacid=42769728 polypeptide=Potri.006G233200.1.p locus=Potri.006G233200 ID=Potri.006G233200.1.v4.1 annot-version=v4.1 MASQHQNGGRSPELRHDPVTNRWVIFSPARAKRPTDFKSKNPQNPNPNNNSLCPFCIGNEHECAPEIFRVPPDLNDPNWKLRVIENLYPALSRNLECPCE EKQGMEFPGRVIGGFGFHDVVIENPVHSVQLSDMEPREIGEVFLAHKKRIQQIMSVQSIKYVQVFKNHGASAGASMSHSHSQILALPVIPSSVSARLEGM KEYFEKTGKCSLCEVRAKELVIDESSHFISIVPFAATFPFEIWIIPRVHSSHFHELDFEKMVDLGGLLKLMLRKISLQLNNPPFNFMIQTSPVQIKESES CYTHWFLQIVPQLSGVGGFEIGTGCYINPVLPEDAAKVMREVNLPMQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.006G233200 [exp]	0	1
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	5.83	0.7976
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.010G248300 [exp]	5.91	0.7646	EEL.2
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	11.83	0.7481
AT1G26800			RING/U-box superfamily protein...		Potri.008G087200 [exp]	16.09	0.7300
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.008G105800 [exp]	17.14	0.7257
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.013G045000 [exp]	17.66	0.7948
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	19.59	0.7967
AT3G09250			Nuclear transport factor 2 (NT...		Potri.006G093700 [exp]	19.67	0.7962
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	22.44	0.7630
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036340 [exp]	22.64	0.7619

Compare expression of checked genes

Potri.006G233200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.