Plant FIBer expression Database

ELF3.3 (Potri.006G233800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ELF3.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25930 363 / 1e-115 PYK20, ELF3 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
AT3G21320 115 / 1e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G045000
[exp]
300 / 5e-93 AT3G21320 202 / 6e-58 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005501
[exp]
548 / 0 AT2G25930 304 / 5e-93 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Lus10007459
[exp]
437 / 3e-140 AT2G25930 218 / 1e-59 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Lus10006857
[exp]
83 / 2e-16 AT2G25930 110 / 8e-26 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Lus10037599
[exp]
64 / 3e-10 AT2G25930 88 / 2e-18 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G233800.1 pacid=42770569 polypeptide=Potri.006G233800.1.p locus=Potri.006G233800 ID=Potri.006G233800.1.v4.1 annot-version=v4.1
ATGAAGAGAGGGAAAGATTATGATAAGATAATGGGGCCTATGTTTCCTAGGCTTCATGTGAATGATACAGATAAAGGAGGGCCTAGAGCTCCCCCAAGGA
ACAAGATGGCTCTTTATGAGCAACTTAGTATTCCATCTCAAAGGTTTAATCCTGATGTTTTGCCTCGTAATTCGAGTAATACTAGCGACTTAGCTCCTAC
AGGATCCTCAAGCCAGGGCAGTGGCCTTGAAAGACATTTTCCTTACCCTCATTATGTCCCTTCTCCAACACCCACTGATGTGGCTGAGAAATACCATTCT
CGCCAGCCTGATGGAAGAAATTTGAACACTCCAGTGGCACCGCTGATGCAACGAAAGAAGGTAGGTGAAGAAGATGATTTTACAGTTCCTGTTTTTGTTC
ATTCCGGGAAGGGTCAAGGTCAGACTAAAATGCAGACTAGTGCTGCTCAGGAAAAACTCGCTTCCCTCTGCCCTACTTATTTGGGTCATTCATCGAGAAT
CCAAAATGCTGGTGATAATGGTCATATTGGCTCCACAGGTCTCAATCTGAGACCAGACACAAGTAACCAGAGTGAAGATAACCTAGAAGTGTGTGTCTCA
AGTAGTGATCATATAGCAAGACATTCCACAAATTTGCGAACCAGAGAAAAGAATGACATTCCTGAAGAAGGCAATGCATCTCAAAATCAGCAATATCGAA
ATAACCTTGTGTCTAATTTTACCAGATTACATGAAAATGATACTTGTTTGCAACAAGAGACTTCAGCTAGGTTGCAATCAAATCACAGTGAACATGGTGA
CCATGTTCCTGAGTCGAGGAGGCAAAAGGAGAAAATAAACATTTTTCAGCCTGGAAATGACTCTCATTTGAGGAAGGATTGTAGTAGTCCCAATGAACCT
GAAATTGACAGCGAATGTTTTGGAGACAAGACTTGTGGGTCACTGCAATTCAGAAATGGAGACAAAAGCAATGATGCCTCTGAGACCTCCATGGTGGATT
CTGTATCAGTGTTGGATATTTCTCCAGATGATGTTGTGGGAATTATTGGTCAGAAACATTTCTGGAAAGCAAGAAGAGCAATTGCCAATCAACAAAGAGT
GTTTTCCGTACAACTGTTCGAGTTGCATAGACTGATAAAGGTTCAGCAACTGATCGCAGGATCCCCACATGTCTTACTTGAGGAAGAGGTTCATCTGGCC
AAACCTCCTATGAAGGGCTCTCCTTGTAAGAACCTTCCATCAGAATGTGCTGTAACACCTCCAGTTCATGTTGCCAAGCACAAAGATAATTCAGAGAACC
CAAACCATAAGATGGAATGTTTTGCAGAGAATGCAGTTGGGAAGACACCCTTTGCTTCTGTGAAAAATGGTCAGCCTCCAAATTTCGGGCCCCATGCAGG
ACCGACAACAGTTCCCATGGCTTCTGACACCAAAATGGCTCCTTGGTGTTTCCATCCTCCTCCTGGACTTCAATGGTTAGTTCCTGTAATGTCCCCCTCA
GAAGGATTTGTATATAAGCCTTACACTGCCCCTGGATTCATGGGATCGGGTTGTGGAGGATGTGGACCTTTTGGGCCAATTCCCTTGACAGACAACTTTA
TGACTTCAGCTTATGCGATTCCAACATCTCATTATCATCAAGGTATTGGGGTCTCACCAGGTGCTCCTCCAGTTGGTAATGCTTGCTTCGCCCCATATGG
CATGCCAGGAATGAACCCAGCCATCTCAGGTTCTGCAGGGTCTGGTTCCTGTGGTCAAACTGCTCAGTTTCCAGGAGGCATTTTGAGCTCGAACATGCCA
CATCAAAGCTCATGTAATGAACGGACTCAAAAGAGTGAAGCTGTTTTAGAAGGTATGAAGCTTCGGGCATCTAAAAACACTTCGGTACAAGGAAGTACAG
GTAGTAGTCCCAGTGGCAGAGTGCAAGGGGTTGGGACTGTTCAAGCCGCTGATGGAAGAGCTGCGTTCCCACCTTTCCCAGTGACTCCTCCTTGCCCTGA
GGGAGCCCCTCAGCATCAAGAGACAGACCAGCTGTCGAAAGTGATCAAGGTTGTGCCTCACAATGGTAGATCTGCTACTGAATCAGTAGCTCGAATTTTC
CAATCCATACAGGAAGGGAGAAAACAATACGACTCTCTTTAG
AA sequence
>Potri.006G233800.1 pacid=42770569 polypeptide=Potri.006G233800.1.p locus=Potri.006G233800 ID=Potri.006G233800.1.v4.1 annot-version=v4.1
MKRGKDYDKIMGPMFPRLHVNDTDKGGPRAPPRNKMALYEQLSIPSQRFNPDVLPRNSSNTSDLAPTGSSSQGSGLERHFPYPHYVPSPTPTDVAEKYHS
RQPDGRNLNTPVAPLMQRKKVGEEDDFTVPVFVHSGKGQGQTKMQTSAAQEKLASLCPTYLGHSSRIQNAGDNGHIGSTGLNLRPDTSNQSEDNLEVCVS
SSDHIARHSTNLRTREKNDIPEEGNASQNQQYRNNLVSNFTRLHENDTCLQQETSARLQSNHSEHGDHVPESRRQKEKINIFQPGNDSHLRKDCSSPNEP
EIDSECFGDKTCGSLQFRNGDKSNDASETSMVDSVSVLDISPDDVVGIIGQKHFWKARRAIANQQRVFSVQLFELHRLIKVQQLIAGSPHVLLEEEVHLA
KPPMKGSPCKNLPSECAVTPPVHVAKHKDNSENPNHKMECFAENAVGKTPFASVKNGQPPNFGPHAGPTTVPMASDTKMAPWCFHPPPGLQWLVPVMSPS
EGFVYKPYTAPGFMGSGCGGCGPFGPIPLTDNFMTSAYAIPTSHYHQGIGVSPGAPPVGNACFAPYGMPGMNPAISGSAGSGSCGQTAQFPGGILSSNMP
HQSSCNERTQKSEAVLEGMKLRASKNTSVQGSTGSSPSGRVQGVGTVQAADGRAAFPPFPVTPPCPEGAPQHQETDQLSKVIKVVPHNGRSATESVARIF
QSIQEGRKQYDSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Potri.006G233800
[exp]
0 1 ELF3.3
AT3G46640 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, H... Potri.009G035000
[exp]
4.69 0.8437
AT3G46640 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, H... Potri.001G243600
[exp]
6.78 0.7644
AT2G42280 bHLH bHLH130 basic helix-loop-helix (bHLH) ... Potri.016G050500
[exp]
9.79 0.7756
AT3G12670 EMB2742 embryo defective 2742, CTP syn... Potri.008G080100
[exp]
14.31 0.7502
AT1G75500 WAT1 Walls Are Thin 1 (.1.2) Potri.007G017800
[exp]
14.83 0.8044
AT5G33280 Voltage-gated chloride channel... Potri.006G064000
[exp]
17.88 0.7808
Potri.010G104000
[exp]
19.33 0.7674
AT4G19160 unknown protein Potri.001G193400
[exp]
19.97 0.8145
AT1G16670 Protein kinase superfamily pro... Potri.001G393200
[exp]
22.84 0.7571
AT3G22380 TIC time for coffee (.1.2) Potri.002G052300
[exp]
25.65 0.7776

Potri.006G233800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.