Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) AT2G43160 224 / 2e-65 ENTH/VHS family protein (.1.2.3.4) AT3G59290 217 / 1e-60 ENTH/VHS family protein (.1) AT3G23350 79 / 5e-16 ENTH/VHS family protein (.1) AT3G46540 69 / 1e-12 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151300 [exp] 230 / 8e-66 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.002G231100 [exp] 217 / 4e-61 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.001G239200 [exp] 65 / 4e-11 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 61 / 1e-09 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007460 [exp] 558 / 0 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1) Lus10005498 [exp] 493 / 5e-168 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1) Lus10025527 [exp] 237 / 4e-68 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 233 / 7e-67 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10021173 [exp] 74 / 8e-14 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 74 / 9e-14 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10040824 [exp] 70 / 1e-12 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 67 / 9e-12 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 48 / 9e-06 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10019571 [exp] 140 / 0.0002 AT2G43160 588 / 0.0 ENTH/VHS family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF01417 [poplar] [flax] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Potri.006G234100.1 pacid=42767654 polypeptide=Potri.006G234100.1.p locus=Potri.006G234100 ID=Potri.006G234100.1.v4.1 annot-version=v4.1 ATGGATTTCATCAAAGTCTTTGATCAAACAGTCCGCGAAATAAAGAGAGAGGTCAATCTCAAGGTCTTGAAGGTTCCTGAAATCGAACAAAAGGTGTTGG ATGCCACTGATGATGCACCTTGGGGTCCACATGGCTCTGCAATGGCTGAGATCGCGCAAGCTACTAAAAAATTCACGGAATGTCAAATGATCATGAATGT CCTGTGGACGAGGTTAGGTGAGACGGGCAAGGACTGGCGTCTTGTTTACAAGGCATTGGCTGTCATAGAATATTTGGTGGCACATGGATCTGATCGTGCT GTTGATGACATAATAGAACACACATTCCAGATATCATCCCTCACAAGTTTCGAATATGTTGAGCCAAACGGAAAGGACTCAGGACTTAATGTGAGGAAGA AGGCTGAAACTATTGTATCCCTTTTGAACAATAAGGATAAAATATACGAAGTCAGGAGTAAGGCTGCTACTAACCGTGATAAGTATGTTGGTCTTTCATC TAGTGGAATATCTTATAAGTCAAGCACAGCCTCATTTGGAAGCAGCAGCAGCAGCTTCCAAAGTAGAGATCGGTATGGAGGTGGCTTAAGTGGTACGGGA GATGAAGATAGCTATGATAGTTTTAAACAAGAAAAGAGTCGAAAGGATTCCTACACGAAGTCACATCGAAGGGGTATAAGTGACAATCAAGACAGCACCT TGAAAAAGGGTTCTGCAGGCTTTGGAAGCAAGGATCAAGATAATTTGTCTTCTCGTGCATCAAGGTCATCTGCTAACCTAAATGCCTCTGATAAGAAAAA CTCAGTTTCAAGTAATTATGATGACGATGATTTTGATGATTTTGATCCCCGAGGAACCTCCAGCACTAAGTCTGCTTCTCAAACCTCAAACCAAGTTGAT TTGTTTGGAGAAAGTTTGATTGGTGATCTCATGGATGCACCTCCATCTGTTCCTACAGAAGCTTTAGTCATGAATGGGAATTCTGCAGAGGTTGATCTGT TTGCTGATGCAGCTTTTGTATCAGCACCTCCCCAAGCTGGAAAGGAAGCAAGTTCACAGACTCAGACAAAGGTTGATCTGTTCACTTCCCAACCTGCCAA CCCTTCTGCAGTTCCTTCTACATTTGACTTCTTTTCTAGTGATGAACCAGTCGCACAACCCGGGATCAAGACTCCAAAATCTGATCCTCCAAATACTAAT GTCTTTGACCCATTTGCTGCAGTTCCAATGAACAATTTTGATGGATCTGATCTTTTTGGTGTATTCACTTCTAGTTCTAATCCAGCTTCTTCAGAACCAA CTCAAAGTCCTATTAAAGATGGCAGCCTTGACAATTTGGATGGGAAGTCTTTGGCAAGCTCCAATCCTCCACAGAAGGAGGGTTTCCAGGTGAAGTCTGG AATATGGGCAGATTCGCTTAGCCGTGGACTGATTGATCTTAATATATCTGCTCCCAAGAAGGTGTCTCTTGTAGATGTTGGTGTCGTGGGTGATCTTACT AATGGATTAGATGAAAGGGAAAAGGGACCTCCAACTTCATTCTATATGGGAACAGCGATGGGCATGGGATCTGGCCTTGGTAAATCCGGGTTAACGGCTT CACAGTCACAAGCAACTGGCGGAGATGATTTCTTCTCAAGCCTTGGTGGCCAACAATACCACTTTGGTAATTTTAAGTAA
AA sequence Show only first row Show all	>Potri.006G234100.1 pacid=42767654 polypeptide=Potri.006G234100.1.p locus=Potri.006G234100 ID=Potri.006G234100.1.v4.1 annot-version=v4.1 MDFIKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDAPWGPHGSAMAEIAQATKKFTECQMIMNVLWTRLGETGKDWRLVYKALAVIEYLVAHGSDRA VDDIIEHTFQISSLTSFEYVEPNGKDSGLNVRKKAETIVSLLNNKDKIYEVRSKAATNRDKYVGLSSSGISYKSSTASFGSSSSSFQSRDRYGGGLSGTG DEDSYDSFKQEKSRKDSYTKSHRRGISDNQDSTLKKGSAGFGSKDQDNLSSRASRSSANLNASDKKNSVSSNYDDDDFDDFDPRGTSSTKSASQTSNQVD LFGESLIGDLMDAPPSVPTEALVMNGNSAEVDLFADAAFVSAPPQAGKEASSQTQTKVDLFTSQPANPSAVPSTFDFFSSDEPVAQPGIKTPKSDPPNTN VFDPFAAVPMNNFDGSDLFGVFTSSSNPASSEPTQSPIKDGSLDNLDGKSLASSNPPQKEGFQVKSGIWADSLSRGLIDLNISAPKKVSLVDVGVVGDLT NGLDEREKGPPTSFYMGTAMGMGSGLGKSGLTASQSQATGGDDFFSSLGGQQYHFGNFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	0	1
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	2.00	0.9658	TUA2.1
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	2.23	0.9616
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	2.44	0.9660
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	2.82	0.9667
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	2.82	0.9687
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	4.89	0.9556
AT1G50120			unknown protein		Potri.007G071000 [exp]	5.47	0.9562
AT5G21070			unknown protein		Potri.004G196600 [exp]	5.91	0.9606
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	6.48	0.9614	Pt-ADL5.1
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	7.87	0.9363

Compare expression of checked genes

Potri.006G234100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.