Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29190 307 / 2e-102 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 273 / 4e-89 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT2G25900 244 / 3e-78 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G03790 198 / 9e-60 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 191 / 3e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G41900 191 / 3e-54 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 186 / 3e-53 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G12850 185 / 2e-52 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 173 / 9e-52 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G40140 171 / 1e-47 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058600 [exp] 550 / 0 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.017G013400 [exp] 221 / 9e-69 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G138300 [exp] 213 / 3e-65 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.001G266700 [exp] 190 / 4e-54 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 189 / 1e-53 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 189 / 2e-53 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 188 / 2e-53 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 188 / 2e-53 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 187 / 4e-53 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012922 [exp] 324 / 8e-109 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10035006 [exp] 315 / 5e-105 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10033665 [exp] 210 / 3e-65 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10017708 [exp] 201 / 7e-62 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 185 / 4e-55 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10019709 [exp] 189 / 2e-53 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 183 / 9e-52 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 177 / 1e-49 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 163 / 3e-46 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G234300.3 pacid=42767083 polypeptide=Potri.006G234300.3.p locus=Potri.006G234300 ID=Potri.006G234300.3.v4.1 annot-version=v4.1 ATGATGATCGGAGAACTCTCTCATCACCGTTCGAATCCCACCGTTCAAATCCCTCAATGGGACCCATACGAAGAGCAAACAACGACGTCTCCCTCGCTGT CCCCAATCCCGACTTCTCCATTCACCAACTTCAACGCCCTCGATTCTCTAACGTCTCTCCACCGTTACCTTCCGTCAAACGAGCCAGACCCTACTTTTGA AGACGAACTAGATTTACCAGTGGACGCGTTCTCATGCGATCACTTCCGTATGTACGAGTTCAAAGTGAAAAGGTGTGCACGTGGCCGGTCACATGACTGG ACTGAGTGTCCGTATGCACATCCTGGCGAGAAAGCGCGGCGCAGGGACCCACGAAGGTATCATTACTCTGGAACGGCCTGCCCGGAGTTTCGGAAAGGTG GCTGCAAGAAAGGCGATGCATGTGAGTTTGCTCACGGTGTCTTTGAGTGCTGGCTCCATCCGGCCCGTTACCGCACTCAGCCGTGTAAGGATGGACCTGC TTGTCGCCGCAGGGTTTGTTTTTTTGCTCACACTCCGGAACAGCTCAGACTCCTTCCTCAGCAGAGTCCTAAGGGAAATGGATCCGGGTCTGGACTCGGG TCGGGGGAATATGATTTTGGGTCCCCGGTTATACATCCTTTTGACTCCTACATGACTAAAGCTGGGATTTTTGTTTCATCTCCGACTTCGATTTTGACTT CACCGCCAGTTTCTCCACCATCTGACTCGCCACCAATGTCTCCAGTCAGTCCACAGGTGATAGGCGGCTCTGGACCCGGATCCTTAAATTCCATGAGTGC GCTTCTTGCTTCGATGCGGGGACTGCAGGTTGGGAAGGCGAAAATGGGATCTCCTGTTGGTTCCTGGGGAGTCCAATCCGGATTTAGATTCGGGTCTCCG CGTGGGTCATCACTACGACCCGGTTTCTGTAGCCTGCCTTCAACTCCTACTAGAACAATGGCAAGTCGGTCTGGACTTAGTCAGTTGGATATCTGGGGCG ATGGGGTCACTTGTGAGGAAGAGCCTGCAATGGAGAGGGTGGAGTCTGGGAGAGATTTAAGGGCAAAGATATATGCCAAGCTAAGTAAAGAGAACTCGGT GGACCGTGACCGAGGTGACTCGGGTGTTTCGGGTCCAGATGTTGGGTGGGTTTCTGAGCTGGTGAAGTGA
AA sequence Show only first row Show all	>Potri.006G234300.3 pacid=42767083 polypeptide=Potri.006G234300.3.p locus=Potri.006G234300 ID=Potri.006G234300.3.v4.1 annot-version=v4.1 MMIGELSHHRSNPTVQIPQWDPYEEQTTTSPSLSPIPTSPFTNFNALDSLTSLHRYLPSNEPDPTFEDELDLPVDAFSCDHFRMYEFKVKRCARGRSHDW TECPYAHPGEKARRRDPRRYHYSGTACPEFRKGGCKKGDACEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHTPEQLRLLPQQSPKGNGSGSGLG SGEYDFGSPVIHPFDSYMTKAGIFVSSPTSILTSPPVSPPSDSPPMSPVSPQVIGGSGPGSLNSMSALLASMRGLQVGKAKMGSPVGSWGVQSGFRFGSP RGSSLRPGFCSLPSTPTRTMASRSGLSQLDIWGDGVTCEEEPAMERVESGRDLRAKIYAKLSKENSVDRDRGDSGVSGPDVGWVSELVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29190	C3HZnF	AtOZF2	Arabidopsis thaliana oxidation...		Potri.006G234300 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	4.24	0.7967
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.013G158500 [exp]	5.65	0.7894
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.009G076100 [exp]	7.21	0.8610
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	8.71	0.8135	HAP2.6
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	9.48	0.8118	SDG906,SUVH3.3
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.016G124900 [exp]	16.24	0.7642	SOF.2
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	16.37	0.8127
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	20.39	0.7782
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.004G084100 [exp]	23.23	0.7286
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.006G053500 [exp]	23.57	0.6905

Compare expression of checked genes

Potri.006G234300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.