Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1793 / 0 unknown protein AT4G32920 1647 / 0 glycine-rich protein (.1.2.3) AT5G47020 1120 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058300 [exp] 2249 / 0 AT5G11700 1779 / 0.0 unknown protein Potri.003G086200 [exp] 1189 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1178 / 0 AT5G47020 1624 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005497 [exp] 1868 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 1863 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10043045 [exp] 1466 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 1408 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007257 [exp] 843 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10000229 [exp] 175 / 2e-50 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 141 / 8e-37 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 115 / 1e-29 AT5G47020 169 / 1e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G234500.1 pacid=42770177 polypeptide=Potri.006G234500.1.p locus=Potri.006G234500 ID=Potri.006G234500.1.v4.1 annot-version=v4.1 ATGGCTCGGTTTCAGTTCATTTTCACCTTTATACCCATTTTAATTACAATAATAACCCTAACCACAAACCTTAGAGTTCTCTGTTCGGGTTCGGATTCGG ATTCGGAATCGGGTTCCTTTTCGGTAATTGATTTCGATTCCAATCTCCTCTTCCACCAAGACTACTCGCCACCAGCACCACCTCCACCGCCGCCGCATCC ACCGTCGGCATCTTGCACTGACGATCTCGGAGGCATCGGTTCGATTGATACTGTATGTCAAATAGTTGCTGATGTGAACCTCACTCGTGACGTGTACATA GAAGGGAAAGGAGATTTTAATATCCATCCTGGTGTGAGGTTTCATTGCCCTAATTTTGGATGTTCAATAACGATAAATGTCTCAGGGAATTTCAATTTAT CAGTCAATTCGTCTATTGTGACTGGGACTTTTGAGCTTGTGGCGAATAACGCTAGTTTTTTTAATGGTTCGGTTGTGAATACGACGGGATTAGCTGGAGA TCCTCCCCCGCAAACGAGTGGAACACCACAGGGCTTAGAAGGGGCGGGCGGAGGGCATGGAGGGAGAGGGGCATGTTGTTTGGTGGATAAAGAGAAGTTG CCGGAGGATATTTGGGGAGGAGATGCGTATTCTTGGTCAAGTTTGCAGGATCCTTGGAGTTATGGGAGTAAAGGAGGGAGTACGAGTAAGGAAGTGGATT ATGGAGGGGCAGGAGGTGGGAGAGTGAAAATGAAAGTGAAGGAGTATTTGGCTGTGGATGGAGCTATATTGGCTGATGGTGGTTATGGGGGTGTCAAGGG AGGTGGTGGTTCGGGTGGGAGCATACTTTTGAAGGCTTATAAAATGACTGGAGGTGGCAGGATAAGCGCTTGTGGAGGCAATGGTTTTGCTGGTGGCGGT GGTGGAAGAGTTTCAGTTGACATTTTCAGTAGGCATGACGACCCTCAAATTTTTGTGCATGGAGGGAATAGTTTCGGTTGTCCAGAAAATGCAGGTGGTG CTGGAACTTTATATGATGCTGTTGCCCGGAGCCTTACTGTGAGCAATCACAATATGTCAACAGATACAGATACACTTATTTTGGAGTTTCCTTATCAGCC TCTCTGGACAAATGTTTATGTTCGAAATCATGCCAGGGCTACTGTTCCATTGCTCTGGAGTCGTGTTCAGGTCCAAGGACAAATAAGTCTGTTATGCAGT GGAGTCCTAAGCTTTGGGCTAGCTCATTATGCTTCGTCAGAGTTTGAATTATTTGCGGAAGAGCTATTAATGAGTGACTCTGTAATCAAGGTTTATGGGG CTCTACGCATGAGTGTGAAAATGTTCTTAATGTGGAATTCCAAAATGATCATAGATGGCGGTGAAGATGTAACTGTTGCGACTTCTTTGCTTGAGGCTAG CAATCTAGTTGTTCTTAAGGAATCATCTGTCATACATTCTAATGCCAATCTGGGGGTTCATGGTCAAGGTCTATTGAATTTGTCTGGATCAGGCAATTGG ATTGAAGCTCAACGTTTGGTTCTATCACTTTTTTATAGTATTCATGTTGCACCTGGATCTGTGTTGCGTGGTCCTGTGGAGAATGCAACAAGTGATGCAA TTACGCCAAGGCTCCATTGCCAACTTGAGGAGTGCCCTGCAGAACTTTTTCATCCTCCTGAAGATTGCAATGTGAACTCATCTCTTTCTTTTACCCTTCA GATATGCCGAGTGGAGGATATTACAGTTGAGGGACTTATAGAAGGATCTGTTGTCCATTTTAATCAGGCAAGAGCAATATCTGTTCCATCTTCTGGAACA ATAAGTGCATCTGGCATGGGCTGCACTGGTGGTGTGGGTAGAGGTAATGGTTTAAGCAATGGGATTGGCAGTGGTGGCGGCCATGGTGGCAAAGGTGGGT CTGCATGTTACAATGATAATTGTGTTGATGGTGGTGTTTCATATGGTGATGCAGAGCTACCTTGTGAACTTGGTAGTGGAAGTGGACAGGAAAACTCTTC TGGTTCTACTGCAGGTGGTGGCATTATAGTAATGGGTTCATTGGAGCATCCTTTGTCAAGTTTGTCTGTTGAAGGTTCAGTCAGAGTTGATGGTGAAAGT TTTAAAGGAATCACTAGAGACCAACTGGTTGTCATGAAAGGTACTGCTGGAGGTCCTGGCGGTGGTTCTGGAGGAACTATTCTTCTGTTCTTGCATACAC TAGATCTTGGGGAGCATGCTGTACTTTCAAGTGTTGGGGGATATGGTAGTCCAAAGGGGGGCGGTGGAGGTGGTGGTGGAAGAGTTCACTTCCATTGGTC AGACATTCCAACTGGGGACATGTACCAGCCCATTGCTCGTGTGAATGGAAGCATCCACACTTGGGGAGGATTGGGAAGAGATGATGGTCATGCTGGGGAA AACGGAACAGTGACGGGAAAAGCTTGCCCAAAGGGGCTGTATGGAATATTTTGTGAGGAATGTCCAGTTGGCACATATAAGAATGTAACTGGATCTAGTA GAGTGCTTTGTCATTCGTGCCCTGCTGATGATCTTCCTCGTCGTGCTGCTTATATTGCTGTTCGAGGTGGTATTGCTGAAACTCCATGTCCTTACAAATG TGTTTCGGAGAGATTTCACATGCCACATTGTTATACAGCCCTAGAAGAGTTGATTTACACGTTTGGTGGGCCATGGCTGTTTTGTCTTCTTCTTTTGGGT CTCCTCATCCTCTTAGCGCTGGTGCTCAGCGTTGCTCGGATGAAATTTGTTGGGGTGGATGAATTACCTGGTCCAGCTCCCACTCAACATGGCTCTCAGA TAGATCATTCTTTTCCCTTCCTAGAGTCATTAAATGAGGTTTTGGAAACAAATAGAGCTGAGGAGTCTCAGAGTCATGTGCACAGAATGTATTTTATGGG CCGTAATACTTTCAGTGAGCCTTGGCATCTTCCCCATACCCCTCCTGAGCAAATAAAAGAGATTGTATATGAGGGTGCATTCAATACATTTGTGGATGAG ATTAATGGTATAGCTGCTTATCAATGGTGGGAAGGTGCAATTTACATTTTAGTGTCTGTTCTTGCATACCCCCTTGCATGGTCATGGCAGCAATGGAGAC GGAGAATTAAACTGCAAAGACTGCGAGAGTTTGTTCGATCGGAGTATGACCATGCTTGCTTGCGCTCTTGCCGTTCACGGGCTCTCTATGAAGGGCTTAA GGTAGCTGCAACCTCTGATTTAATGCTCGGATACTTGGATTTCTACCTTGGTGGAGATGAGAAGAGAACTGATATTCCTGCTCGCCTACATCAAAGATTT CCAATGTCTATACTTTTTGGAGGTGATGGAAGTTACATGGCTCCTTTCTCAATTCAAAGTGACAATATTCTTACCAGCCTCATGAGCCAGATGGTCCCTT CTACCACTTGGTATCGAATAGCTGCTGGTTTGAATGCACAACTGCGCTTGGTTTGTCGTGGGCGGCTAATAGTAACTTTTCGACCTGTCCTTAGATGGCT TGAAACGCATGCTAATCCAGCTTTGAGAAACCATGGAGTGCATGTTGATCTTGCGTGGTTTCAGGCTACTACTTCTGGTCATTGCCAGTATGGACTTTTG GTTCATGCTGTTGAAGAAGAAAGTGAACATACATCTGTTGAAGGCATTGATGGTGCAAAACAAATTGAAGAAGACTCACGCCTCGTGAAGAACACAAACC AAGAAAATCCATCTGGTCATTGGAGAGAAGAGGTGTTTGTATCCCAAGCCCACAGAAACAGGGACAACTACATGCGGCGGAAAAGGATTTATGGGGGGAT TATAGATACTAACAGCTTAAGAATGCTGGAAGAGAAGAGGGATTTATTTTACCTCATCTCATTCATAGTTCATAACACTAAACCTGTTGGCCATCAGGAT CTTGTTGGTTTGGTCATCTCTACTCTTCTTTTAGGAGATTTTAGCTTAGTGTTGCTTACTTTACTCCAGCTGTATTCAATTTCATTGGCGGGTGTCTTTC TGGTTTTGTTTATTTTACCTCTTGGCATTCTTATGCCCTTTCCTGCGGGAATCAATGCTTTATTCAGTCATGGACCTAGGCGCTCTGCAGGCCTTGCACG TATCTATGCTTTGTGGATTGTTACATCCTTGATTAATGTTGTGGTTGCTTTTATTTGTGGATATATTCACTATAACAGTCAATCATCTTCGAGTAAGAAG TTCCCCTTTCAGACATGGAGTATTAGCATGGATGAAAGTGAATGGTGGATTTTTCCAGCTGGACTGGTTGTGTGTAAAATCTTACAGTCTCAACTTATAA ATTGGCACGTTGCAAATCTGGAGATTCAAGACCGCTCACTGTATAGTAACGATTTTGAGCTATTCTGGCAGTCATGA
AA sequence Show only first row Show all	>Potri.006G234500.1 pacid=42770177 polypeptide=Potri.006G234500.1.p locus=Potri.006G234500 ID=Potri.006G234500.1.v4.1 annot-version=v4.1 MARFQFIFTFIPILITIITLTTNLRVLCSGSDSDSESGSFSVIDFDSNLLFHQDYSPPAPPPPPPHPPSASCTDDLGGIGSIDTVCQIVADVNLTRDVYI EGKGDFNIHPGVRFHCPNFGCSITINVSGNFNLSVNSSIVTGTFELVANNASFFNGSVVNTTGLAGDPPPQTSGTPQGLEGAGGGHGGRGACCLVDKEKL PEDIWGGDAYSWSSLQDPWSYGSKGGSTSKEVDYGGAGGGRVKMKVKEYLAVDGAILADGGYGGVKGGGGSGGSILLKAYKMTGGGRISACGGNGFAGGG GGRVSVDIFSRHDDPQIFVHGGNSFGCPENAGGAGTLYDAVARSLTVSNHNMSTDTDTLILEFPYQPLWTNVYVRNHARATVPLLWSRVQVQGQISLLCS GVLSFGLAHYASSEFELFAEELLMSDSVIKVYGALRMSVKMFLMWNSKMIIDGGEDVTVATSLLEASNLVVLKESSVIHSNANLGVHGQGLLNLSGSGNW IEAQRLVLSLFYSIHVAPGSVLRGPVENATSDAITPRLHCQLEECPAELFHPPEDCNVNSSLSFTLQICRVEDITVEGLIEGSVVHFNQARAISVPSSGT ISASGMGCTGGVGRGNGLSNGIGSGGGHGGKGGSACYNDNCVDGGVSYGDAELPCELGSGSGQENSSGSTAGGGIIVMGSLEHPLSSLSVEGSVRVDGES FKGITRDQLVVMKGTAGGPGGGSGGTILLFLHTLDLGEHAVLSSVGGYGSPKGGGGGGGGRVHFHWSDIPTGDMYQPIARVNGSIHTWGGLGRDDGHAGE NGTVTGKACPKGLYGIFCEECPVGTYKNVTGSSRVLCHSCPADDLPRRAAYIAVRGGIAETPCPYKCVSERFHMPHCYTALEELIYTFGGPWLFCLLLLG LLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVHRMYFMGRNTFSEPWHLPHTPPEQIKEIVYEGAFNTFVDE INGIAAYQWWEGAIYILVSVLAYPLAWSWQQWRRRIKLQRLREFVRSEYDHACLRSCRSRALYEGLKVAATSDLMLGYLDFYLGGDEKRTDIPARLHQRF PMSILFGGDGSYMAPFSIQSDNILTSLMSQMVPSTTWYRIAAGLNAQLRLVCRGRLIVTFRPVLRWLETHANPALRNHGVHVDLAWFQATTSGHCQYGLL VHAVEEESEHTSVEGIDGAKQIEEDSRLVKNTNQENPSGHWREEVFVSQAHRNRDNYMRRKRIYGGIIDTNSLRMLEEKRDLFYLISFIVHNTKPVGHQD LVGLVISTLLLGDFSLVLLTLLQLYSISLAGVFLVLFILPLGILMPFPAGINALFSHGPRRSAGLARIYALWIVTSLINVVVAFICGYIHYNSQSSSSKK FPFQTWSISMDESEWWIFPAGLVVCKILQSQLINWHVANLEIQDRSLYSNDFELFWQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11700			unknown protein		Potri.006G234500 [exp]	0	1
AT1G72300			Leucine-rich receptor-like pro...		Potri.001G161000 [exp]	3.46	0.8622
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	4.00	0.8428
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	5.65	0.8295	Pt-XLG.2
AT2G35330			RING/U-box superfamily protein...		Potri.003G090000 [exp]	7.00	0.7906
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	8.36	0.8659
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	8.83	0.8330	Pt-TOP1.2
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	9.16	0.8571
AT3G14750			unknown protein		Potri.009G076700 [exp]	9.74	0.8204
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	10.00	0.8603
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	10.19	0.8603

Compare expression of checked genes

Potri.006G234500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.