Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20890 174 / 3e-55 unknown protein AT1G76480 172 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005486 [exp] 169 / 3e-53 AT1G20890 146 / 3e-44 unknown protein Lus10006035 [exp] 170 / 1e-52 AT1G76480 147 / 1e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10333 [poplar] [flax] Pga1 GPI-Mannosyltransferase II co-activator
Representative CDS sequence Show only first row Show all	>Potri.006G234800.2 pacid=42770092 polypeptide=Potri.006G234800.2.p locus=Potri.006G234800 ID=Potri.006G234800.2.v4.1 annot-version=v4.1 ATGCTTTCACATCTGCTGCTTGTGCTCTGCATTGTTGGGTTTAGTCGCAGCATCAACAGCAGCCCAGGTTTCGGAAATGGAGGAGGAGACGACAGGAAGG TTTTGATTGTAGGGGAGGAACTGTGGAAGCAAACTATTCCTTTGCAACTGGGTTCTCGAGTTTACGAGCTGCAAGGGCTTAAATCACATACTTGGTATGA AGTGAAGATATCGTATCCAGCTTCTATACCTGCTAGCTTTACTATACAATTGAAGAAAGATGATTCTGACCCCGGAATGAACCGGGTTGCAAGAAGATTG TTAAATACTGAGAAACTGATTTTCATGACTGATGTTATTCTTGATAGCAATCAGAGTAAATTGTGTGTTTTGGTGAGGGTGGAGCCAGAGGGGGTAGTGG CAATACCAAATGTAGAGGAGAGGAAAGACATCACATTCAATATAGTTTGTGATGAACTATTATTGGGAATCCCACACAAGGCTTGGTGGGTAGTAGTCTT GGTAGTGCTCTGTTTGGGAGTGGCATTCATCATTCCTCATTTTCTTCCATCGTGTCTACTGCTGAGGGATAGAAGGCGAGAAACATTGAATCAGAGTGTT TCCAAAGAATCTTGA
AA sequence Show only first row Show all	>Potri.006G234800.2 pacid=42770092 polypeptide=Potri.006G234800.2.p locus=Potri.006G234800 ID=Potri.006G234800.2.v4.1 annot-version=v4.1 MLSHLLLVLCIVGFSRSINSSPGFGNGGGDDRKVLIVGEELWKQTIPLQLGSRVYELQGLKSHTWYEVKISYPASIPASFTIQLKKDDSDPGMNRVARRL LNTEKLIFMTDVILDSNQSKLCVLVRVEPEGVVAIPNVEERKDITFNIVCDELLLGIPHKAWWVVVLVVLCLGVAFIIPHFLPSCLLLRDRRRETLNQSV SKES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20890			unknown protein		Potri.006G234800 [exp]	0	1
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.017G051600 [exp]	3.74	0.8025
AT5G48760			Ribosomal protein L13 family p...		Potri.017G054600 [exp]	16.00	0.8179	RPL13.2
AT3G06330			RING/U-box superfamily protein...		Potri.008G196400 [exp]	17.02	0.7127
AT3G16080			Zinc-binding ribosomal protein...		Potri.001G183200 [exp]	17.77	0.8095	Pt-RPL37.3
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	18.70	0.8030
AT5G61170			Ribosomal protein S19e family ...		Potri.004G118800 [exp]	27.87	0.8114	RPS19.1
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	31.93	0.7715
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	37.22	0.7680
AT5G01120			Protein of unknown function (D...		Potri.001G247200 [exp]	37.76	0.7500
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	39.33	0.7283	Pt-FUT1.2

Compare expression of checked genes

Potri.006G234800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.