Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 332 / 3e-113 PFK3 phosphofructokinase 3 (.1) AT4G32840 326 / 3e-111 PFK6 phosphofructokinase 6 (.1) AT4G29220 325 / 1e-110 PFK1 phosphofructokinase 1 (.1) AT5G56630 324 / 4e-110 PFK7 phosphofructokinase 7 (.1) AT5G61580 312 / 9e-105 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 240 / 7e-78 PFK2 phosphofructokinase 2 (.1) AT2G22480 190 / 2e-57 PFK5 phosphofructokinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 342 / 2e-116 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 334 / 7e-114 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 323 / 1e-109 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 236 / 6e-76 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.007G010300 [exp] 180 / 7e-54 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.001G079501 [exp] 169 / 4e-53 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005488 [exp] 355 / 1e-121 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 352 / 2e-121 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 326 / 6e-110 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 327 / 6e-109 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 318 / 3e-107 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 238 / 8e-77 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 181 / 6e-54 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 177 / 1e-52 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 117 / 7e-33 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10039992 [exp] 63 / 3e-13 AT5G47810 89 / 6e-23 phosphofructokinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.006G235066.1 pacid=42769927 polypeptide=Potri.006G235066.1.p locus=Potri.006G235066 ID=Potri.006G235066.1.v4.1 annot-version=v4.1 ATGGGTCGCCACAGTGGTTTCATTGCAATGCATGCAACTCTTGCTAGCCGGGATGTGGATTGCTGTTTGATTCCTGAATCACCCTTCTATCTTGAAGGAA AAGGTGGACTATTTGAATTCATTAAACGTCGAATTAAAGAAAATGGACACATGGTTATCGTTGTCGCTGAAGGAGCAGGACAGGATCTTCTTGCAAAGTA CTTGCAATCTATGAACCAGCAAGATGCTTCAGGAAACAATCTGCTTCAAGATGTTGGGTTATGGATATCTCATAAAATTAATGATCATTTTGCAAGAGTA CAGAAGATGGCCATCACTCTCAAATATATAGATCCTACATACATGATTCGTGCTGTTCCAGGTAATGCATCCGATAATGTCTACTGCTCACTCCTTGCTC AAAGTGCAGTTCATGGAGCAATGGCTGGATATACAGGCTTTACAGTCGGACCTGTCAATGGTCGACATTCTTACATTCCTTTTGAGCGCATTAATGAGAG GCAGAACCAGGTTGTGATTACTGACAGGATGTGGGCAAGACTCCTTTCTTCAACTAACCAACCAAGCTTCATAAGCCCCAGAGTTGTTGCCGAAAGCAAG AAAAATCAGTACAAACCTCCAACCCAGTTATTGCATGGTGACAGATGTGAGAACAATCACTAA
AA sequence Show only first row Show all	>Potri.006G235066.1 pacid=42769927 polypeptide=Potri.006G235066.1.p locus=Potri.006G235066 ID=Potri.006G235066.1.v4.1 annot-version=v4.1 MGRHSGFIAMHATLASRDVDCCLIPESPFYLEGKGGLFEFIKRRIKENGHMVIVVAEGAGQDLLAKYLQSMNQQDASGNNLLQDVGLWISHKINDHFARV QKMAITLKYIDPTYMIRAVPGNASDNVYCSLLAQSAVHGAMAGYTGFTVGPVNGRHSYIPFERINERQNQVVITDRMWARLLSSTNQPSFISPRVVAESK KNQYKPPTQLLHGDRCENNH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G235066 [exp]	0	1
AT4G21105			cytochrome-c oxidases;electron...		Potri.011G156400 [exp]	15.68	0.8052
					Potri.001G181601 [exp]	22.49	0.8013
AT1G04710		KAT1, PKT4	3-KETO-ACYL-COA THIOLASE 1, pe...		Potri.013G097500 [exp]	29.41	0.7831	PED1.2
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.007G080000 [exp]	57.62	0.7280
AT1G17350			NADH:ubiquinone oxidoreductase...		Potri.010G076600 [exp]	105.83	0.7191
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Potri.004G207000 [exp]	107.48	0.7103	HSK.1
AT1G64160			Disease resistance-responsive ...		Potri.001G096800 [exp]	116.18	0.7167	Pt-DRR206.2
AT3G24100			Uncharacterised protein family...		Potri.001G315400 [exp]	159.94	0.6705
AT5G13340			unknown protein		Potri.019G001900 [exp]	246.17	0.6802

Compare expression of checked genes

Potri.006G235066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.