Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 399 / 3e-139 PFK3 phosphofructokinase 3 (.1) AT4G32840 392 / 7e-137 PFK6 phosphofructokinase 6 (.1) AT5G56630 387 / 1e-134 PFK7 phosphofructokinase 7 (.1) AT4G29220 383 / 5e-133 PFK1 phosphofructokinase 1 (.1) AT5G61580 361 / 9e-124 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 219 / 3e-69 PFK2 phosphofructokinase 2 (.1) AT2G22480 193 / 2e-58 PFK5 phosphofructokinase 5 (.1) AT4G04040 58 / 9e-10 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G76550 58 / 1e-09 Phosphofructokinase family protein (.1) AT1G12000 56 / 7e-09 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069200 [exp] 412 / 3e-144 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 406 / 5e-141 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 369 / 5e-127 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 259 / 1e-84 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.007G010300 [exp] 181 / 6e-54 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.001G079450 [exp] 87 / 4e-22 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 61 / 1e-10 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.005G257800 [exp] 56 / 9e-09 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015900 [exp] 52 / 1e-07 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011143 [exp] 410 / 9e-143 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 414 / 1e-142 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 397 / 4e-138 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 397 / 9e-138 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 377 / 4e-131 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 252 / 1e-81 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10012738 [exp] 199 / 1e-60 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10002648 [exp] 199 / 1e-60 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 62 / 1e-11 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10025167 [exp] 61 / 2e-10 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.006G235132.1 pacid=42770441 polypeptide=Potri.006G235132.1.p locus=Potri.006G235132 ID=Potri.006G235132.1.v4.1 annot-version=v4.1 ATGGCTGGAGTTTCACAGATGAAAATAGTGAATGGTGTTGCTGGTTATGTGCTTGAAGATGTGCCTCATTTAACCGACTATATTCCGCATCTCCCTACGT ATCCAAATCAGTTACAAGACAATCCAGCCTATGCAGGAGTCAAGCAGTACTTTGTTAATGTGGATGATACTGTTGCTCAAAGGATTGTTGTTCATAACAG CAGTCCAAGAGGGACACACTTTCGACGTGCCGGACCTCGTCAAAAGGTGTATTTTAAGTCAGATGAGGTGCGCGCGTGTATAGTAACATGTGGGGGTTTA TGTCCTGGCCTCAACACAGTGATCAGGGAAATTGTGTGTGGCCTTTACCATATGTATGGTGTCACCAAGGTCCTTGGGATTGATGGAGGCTACAGGGGTT TCTATGCCAAGAACACCATTAATTTAACTCCTAAGGTAGTTGATGACATCCATAAACGTGGCGGTACAATCCTGGGGACATCAAGAGGTGGTCATGACAC ATCAAAGATAGTTGACAGTATTCAGGATCGGGGGATTAATCAGGTTTATATAATTGGAGGTGATGGAACTCAAAAAGGAGCAGCAGTGATATATGAGGAA ATTAGAAGACGCGGTCTCAACGTTGCAGTTGCTGGAATTCCCAAAACCATCGATAATGACATTCCTGTCATCGACAGGTCCTTCGGTTTTGATACTGCAG TCGAGTAG
AA sequence Show only first row Show all	>Potri.006G235132.1 pacid=42770441 polypeptide=Potri.006G235132.1.p locus=Potri.006G235132 ID=Potri.006G235132.1.v4.1 annot-version=v4.1 MAGVSQMKIVNGVAGYVLEDVPHLTDYIPHLPTYPNQLQDNPAYAGVKQYFVNVDDTVAQRIVVHNSSPRGTHFRRAGPRQKVYFKSDEVRACIVTCGGL CPGLNTVIREIVCGLYHMYGVTKVLGIDGGYRGFYAKNTINLTPKVVDDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE IRRRGLNVAVAGIPKTIDNDIPVIDRSFGFDTAVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G235132 [exp]	0	1
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G166300 [exp]	1.00	0.8648
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	1.41	0.8642
AT1G28100			unknown protein		Potri.001G066000 [exp]	5.83	0.8309
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	6.00	0.8516
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.004G105200 [exp]	6.24	0.8598
AT3G28480			Oxoglutarate/iron-dependent ox...		Potri.017G075100 [exp]	6.70	0.8559
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.002G214200 [exp]	9.89	0.8370
AT1G33055			unknown protein		Potri.011G149400 [exp]	15.00	0.8161
AT2G36460			Aldolase superfamily protein (...		Potri.006G165700 [exp]	25.29	0.7886
					Potri.003G074051 [exp]	28.84	0.8375

Compare expression of checked genes

Potri.006G235132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.