Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32850 909 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 900 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT1G17980 691 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT3G06560 275 / 2e-83 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057200 [exp] 1354 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.015G043200 [exp] 744 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.008G102500 [exp] 295 / 5e-91 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006029 [exp] 1008 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10005490 [exp] 839 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 813 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 801 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10021643 [exp] 741 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 728 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 711 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 685 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain CL0260 [poplar] [flax] PF04926 [poplar] [flax] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [poplar] [flax] PF04928 [poplar] [flax] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Potri.006G235400.6 pacid=42769611 polypeptide=Potri.006G235400.6.p locus=Potri.006G235400 ID=Potri.006G235400.6.v4.1 annot-version=v4.1 ATGGTGGGTTCTCAGAGTCCTAACGGAACTGCGGCGAAGAGGTACGGAATAATGAAACCAATCTCCGTCGCGGGTCCTACTGAACCTGATCTCCATCGAA ATGCGGAATTAGAGAAGTTTTTGGTTGATTCGGGTTTATACGAGAGCAAAGAAGAGGCTATGAAGAGAGAAGATGTTCTGGGCCGTATCGATCAGATTGT GAAAGACTGGGTTAAGCGATTGACGCGTCAAAGGGGATATACTGATCAGATGGTAGAGGAAGCCAATGCTGTTATTTTTACTTTCGGGTCTTATCGTCTT GGGGTGCATGGTCCTGGGGCTGACATAGACACCTTGTGTGTTGGACCATCATATGTGAATCGAGAGGGAGACTTCTTTATTGTCTTGCATGATAAGCTGG CTGAGATGGAAGAAGTTACTGAACTTCAGCCAGTTCCAGATGCTCATGTCCCGGTTATGAAGTTTAAATTCCAGGGAATATCAATTGACCTTCTTTATGC AAGTATATCCCTTTTGGTTGTTCCAGAAGACCTGGACATCTCCAATGGGTCTGTGCTCTACGAAGTGGATGAGCAAACTGTTCGAAGTCTAAATGGGTGC AGGGTTGCTGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTTCGGGCAACACTCAGATGTCTGAAGTTTTGGGCTAAAAGGCGCGGTGTTTATT CAAATGTTACTGGTTTCCTTGGTGGAGTAAACTGGGCTCTTCTAGTTGCCCGAGTGTGCCAGCTTTATCCTAATGCTATTCCTAGTATGCTAGTCTCTCG GTTCTTCAGAGTTTATACACAATGGCGTTGGCCGAATCCTGTGATGCTATGCTCAATAGAAGAAGATGCACTTGGGTTTCCTGTGTGGGATCCTCGCAAA AATCCTCGAGACCGGTTTCATCATATGCCAATAATAACTCCTGCATATCCTTGCATGAATTCTAGCTATAATGTGTCTACAAGTACTCTTCGTGTTATGA CAGAGCAATTCCAAAGTGGTAACAGGATATGTGAGAAGATTGAGCTGAACAAGGAACAGTGGAGTGCTCTTTTTGAGCCTTATCTTTTCTTTGAGGCATA CAAAAATTACCTGCAAGTTGACATAGTTGCAGCAGATGCTGTTGATTTGCTAGCTTGGAAAGGCTGGGTAGAGTCTCGGCTTAGACAACTTACCTTGAAG ATAGAGCGGGACACTGATGGGATGCTGCAGTGCCATCCTTATCCAAATGAGTATATAGATCCGTCCAAGCAATGCGCTCATTGTGCTTTCTTCATGGGTT TGCAGAGGAAAGAGGGAGTGACTGGCCAGGAGGGCCAGCAATTTGATATACGGGGAACGGTTGATGAGTTTAGGCAAGATATAAACATGTACTTGCCTTG GAAACCAGGGATGGATATATATGTCTCTCATGTTCGTAGAAGACAGCTTCCGGGCTTTGTTTTCCCTGATGGGTACAAGCGTTCTCGACCATCACGACAT GTGAACCAACAGACTAACAGGACTAGTGAAGATGTTGCAAGATCCCAGTCTGGGTCTGCTGAGAGACATGTTAAGCGGAAAAATGATTGTGAAATGGCAG ATTTGAAGCCAGTTAAACCAGAGAAACGGGCGTCTACAAGCCCACAAAGACTGCAGTCTGTTTCTCCTTCTAGTAGTGCTGGTAGGTCTGGTATGACATC TCTGGCTAGTTCCTGTGAAGGGGTTATATTAGGGTGTTCAACCATTGGGGACATTGTTAGCAACTGCGAGGATGTTGCTAGCAACTCCGAGGTTAGGTCA ACTAGTTGGCAGTTAGAGAGTGAAAAAAGTGATTTGGGGGATGCTAGGCAGCTGGGTGTGACTGTCTATCAGGAGTCACCCTCAAATCGGCAGACCTCAA TGGATGTACATGATTCACCAATAGTTAGGAATGAGCTAGAACCAGCTGATCATATGAATGGCTCAGAGCCAATGGGATTGATGTTTGATCGAATTACAAA GCAGGAGGTGGTCAGTTCACATGAAGTGCCAAATTTTGAAACTGGGGAAAAACATGAGGTTGGCGTGAATGAAAACATTGAGGATTTGGGGTCAAATTTC TTGGAGAATGGATCTTCAAGGAAACTGATGAATTGGGTTGGGGGTGCTAGTCGAGGCATGGAGGTGGACCAAGAACTTGTCAAACCATGTAGTCAGACAG CTGTTGTAGAATTTGCTGAAAGTGTTATAAGTTCACATTCTGGCTCTCAGAACCTCAACTACGAGGGTAATGTGTGTGCTGTGGATGCGGATTCACTTCT GGAAAGTGGATGTTTGAATGTGAGTGGAGCTGAGTATTATTGCAGAACAGCTTGCCAGAAGAATTAG
AA sequence Show only first row Show all	>Potri.006G235400.6 pacid=42769611 polypeptide=Potri.006G235400.6.p locus=Potri.006G235400 ID=Potri.006G235400.6.v4.1 annot-version=v4.1 MVGSQSPNGTAAKRYGIMKPISVAGPTEPDLHRNAELEKFLVDSGLYESKEEAMKREDVLGRIDQIVKDWVKRLTRQRGYTDQMVEEANAVIFTFGSYRL GVHGPGADIDTLCVGPSYVNREGDFFIVLHDKLAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISNGSVLYEVDEQTVRSLNGC RVADQILKLVPNVEHFRATLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDALGFPVWDPRK NPRDRFHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQSGNRICEKIELNKEQWSALFEPYLFFEAYKNYLQVDIVAADAVDLLAWKGWVESRLRQLTLK IERDTDGMLQCHPYPNEYIDPSKQCAHCAFFMGLQRKEGVTGQEGQQFDIRGTVDEFRQDINMYLPWKPGMDIYVSHVRRRQLPGFVFPDGYKRSRPSRH VNQQTNRTSEDVARSQSGSAERHVKRKNDCEMADLKPVKPEKRASTSPQRLQSVSPSSSAGRSGMTSLASSCEGVILGCSTIGDIVSNCEDVASNSEVRS TSWQLESEKSDLGDARQLGVTVYQESPSNRQTSMDVHDSPIVRNELEPADHMNGSEPMGLMFDRITKQEVVSSHEVPNFETGEKHEVGVNENIEDLGSNF LENGSSRKLMNWVGGASRGMEVDQELVKPCSQTAVVEFAESVISSHSGSQNLNYEGNVCAVDADSLLESGCLNVSGAEYYCRTACQKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	0	1
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	1.41	0.8824
AT3G04160			unknown protein		Potri.019G029400 [exp]	4.24	0.8471
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	5.47	0.8025
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	6.63	0.8328
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	7.07	0.8308
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.004G078866 [exp]	7.14	0.7683
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	7.14	0.8354
AT5G13590			unknown protein		Potri.008G047600 [exp]	9.48	0.7874
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	9.64	0.7869
AT5G24350			unknown protein		Potri.012G020000 [exp]	11.66	0.8180

Compare expression of checked genes

Potri.006G235400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.