Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 744 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 471 / 1e-152 HSL1 HAESA-like 1 (.1) AT5G25910 438 / 4e-142 AtRLP52 receptor like protein 52 (.1) AT5G65710 423 / 1e-134 HSL2 HAESA-like 2 (.1) AT4G28490 410 / 2e-129 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 367 / 2e-113 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 363 / 1e-111 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 356 / 7e-109 Leucine-rich receptor-like protein kinase family protein (.1) AT1G72180 341 / 7e-104 Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 341 / 1e-103 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235800 [exp] 1308 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 1100 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 717 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 694 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 686 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 660 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 456 / 5e-147 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 442 / 3e-141 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 432 / 6e-138 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006028 [exp] 882 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 867 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10034978 [exp] 637 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 629 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10018636 [exp] 448 / 7e-144 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 440 / 1e-140 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 432 / 7e-138 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 365 / 7e-113 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 362 / 2e-111 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 357 / 1e-109 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G235500.2 pacid=42770563 polypeptide=Potri.006G235500.2.p locus=Potri.006G235500 ID=Potri.006G235500.2.v4.1 annot-version=v4.1 ATGTCCGAATTAACCATCCTATTTCTCAGAACTTCACCCCTCCTCTGCGTTCTAGTCCTCCTACTTTCCCTGCCCTTCAGAGTAATTTCCCAAGATGCCA ACACTGAAAAAACTATACTCCTAAAACTGAAACAACAACTTGGCAATCCACCGTCCATTCAGTCCTGGAACTCATCATCCTCGCCGTGCAATTGGACAGG GGTAACCTGTGGAGGCGATGGCTCGGTGTCTGAACTTCACCTTGGTGATAAAAACATCACAGAAACAATCCCAGCAACAGTTTGTGACCTGAAAAACCTG ACATTTCTCGAAATGAATTTTAACCACATTCCAGGAGGATTTCCAAAAGTTCTGTACAGTTGCACAAAGCTTCAGCACTTGGACCTGTCACAGAATTTTT TTTTCGGTCCAATACCTGATGATATTGATAAATTATCAGGTCTCAGGTATATAAACCTTGGAGCTAATAACTTCACAGGCAATATTCCACCACAGATGGC CAACCTGACAGGGTTGCAGACATTGTTTCTGTATCAGAATCAGTTCAACGGTACGTTACCTAAGGAGATTAGTAAGCTTTCCAATCTTGAAGAGCTGGGA TTGGCGATTAATGAGTTTGTGCCCTCTTCAATTCCTGTGGAGTTCGGTCAGCTAAAGAAGTTGAGGTATCTGTGGATGAGACTCGCGAATTTGATTGGTG AAATACCGGAGAGCTTGACCAATCTTTCAAGTCTTGAGCACTTGGATTTAGCTGAAAACGATTTGGAAGGTAAGATTCCTGATGGGTTGTTTTCGTTGAA GAATTTGACTTATTTGTATCTCTTCCAGAATAAGTTGTCTGGTGAGATACCTCAGAGAGTCGAAACGTTGAATTTGGTGGAGATTGATCTAGCAATGAAC CAATTAAATGGTTCGATTCCAGAAGATTTTGGCAAGTTGAAGAAATTGCAACTTCTGAGTCTGTTTGACAATCACTTGTCCGGTGAGGTACCACCAAGTA TAGGCCTTCTTCCTGCACTGACAGCATTTAAGGTTTTTAGCAACAACATGAGTGGAGCCTTGCCACCTAAAATGGGCCTTTATTCAAAACTTGTAGAATT TGATGTTGCAACCAATCAATTCAGTGGCCAACTGCCTGAGAATTTATGTGCTGGAGGTGTCTTGCTGGGTGCAGTTGCCTTTGAAAACAATCTCTCTGGG CGGGTGCCTCAGTCTCTTGGAAATTGCGACAGTTTGCTCACGGTTCAGCTTTACAGCAACAGCTTTTCAGGTGAGATACCTGCAGGTGTTTGGACAGCCT CCAATATGATTTACTTGATGTTAAGTGACAATTCCTTTTCGGGGGGACTTCCGAGCAAGCTGGCATGGAATTTGTCAAAGTTGGAACTCGGCAACAACAG ATTTTCTGGTCCGATTCCTCCTGGAATCTCTAGCTGGGTGAACTTGGTTGATTTCAAGGCGAGCAACAATCTTCTTTCTGGCGAAATTCCTGTGGAAATA ACGAGTCTGCCTCACCTTTCAAATCTTCTGCTTGATGGAAATCAATTTTCAGGTCAACTCCCATCCAAGATAATATCCTGGAAGTCATTGACTAGTTTAA ATCTCTCAAGAAATGCACTTTCTGGCCAGATCCCAAAGGAGATCGGGTCTTTACCTGACCTGCTTTATTTAGATTTGTCTCAAAACCATTTTTCTGGTGA AATCCCTCTTGAATTTGACCAGTTGAAACTGGTTTCTCTGAACTTGTCCTCCAATCATCTATCTGGGAAAATCCCAGATCAGTTTGATAACCATGCCTAT GATAACAGCTTCCTGAACAATTCTAATCTCTGTGCTGTTAATCCAATTCTAAACTTTCCAAATTGCTATGCTAAACTTCGCGACTCTAAAAAAATGCCCT CTAAAACTCTTGCCTTGATTCTGGCTCTTACTGTGACCATTTTTCTAGTCACTACGATAGTCACCTTGTTTATGGTTAGGGACTACCAAAGAAAGAAGGC AAAACGTGATCTGGCAGCATGGAAGCTGACCTCGTTCCAGAGATTGGACTTCACAGAAGCAAACGTTTTGGCAAGTTTGACAGAAAATAATCTGATTGGA AGTGGAGGATCGGGGAAGGTATACCGGGTGGCCATAAACCGTGCAGGTGACTACGTTGCTGTCAAGAGGATTTGGAATAATGAAACAATGGATCACAATC TTGAAAAGGAATTTTTGGCGGAGGTTCAGATACTGGGAACAATTAGGCATGCAAACATAGTTAAATTATTGTGCTGTATTTCAAGTGAGCAGCTCAAAGC TTCTTGTTTATGA
AA sequence Show only first row Show all	>Potri.006G235500.2 pacid=42770563 polypeptide=Potri.006G235500.2.p locus=Potri.006G235500 ID=Potri.006G235500.2.v4.1 annot-version=v4.1 MSELTILFLRTSPLLCVLVLLLSLPFRVISQDANTEKTILLKLKQQLGNPPSIQSWNSSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNL TFLEMNFNHIPGGFPKVLYSCTKLQHLDLSQNFFFGPIPDDIDKLSGLRYINLGANNFTGNIPPQMANLTGLQTLFLYQNQFNGTLPKEISKLSNLEELG LAINEFVPSSIPVEFGQLKKLRYLWMRLANLIGEIPESLTNLSSLEHLDLAENDLEGKIPDGLFSLKNLTYLYLFQNKLSGEIPQRVETLNLVEIDLAMN QLNGSIPEDFGKLKKLQLLSLFDNHLSGEVPPSIGLLPALTAFKVFSNNMSGALPPKMGLYSKLVEFDVATNQFSGQLPENLCAGGVLLGAVAFENNLSG RVPQSLGNCDSLLTVQLYSNSFSGEIPAGVWTASNMIYLMLSDNSFSGGLPSKLAWNLSKLELGNNRFSGPIPPGISSWVNLVDFKASNNLLSGEIPVEI TSLPHLSNLLLDGNQFSGQLPSKIISWKSLTSLNLSRNALSGQIPKEIGSLPDLLYLDLSQNHFSGEIPLEFDQLKLVSLNLSSNHLSGKIPDQFDNHAY DNSFLNNSNLCAVNPILNFPNCYAKLRDSKKMPSKTLALILALTVTIFLVTTIVTLFMVRDYQRKKAKRDLAAWKLTSFQRLDFTEANVLASLTENNLIG SGGSGKVYRVAINRAGDYVAVKRIWNNETMDHNLEKEFLAEVQILGTIRHANIVKLLCCISSEQLKASCL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	1.00	0.9973
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	2.00	0.9125
AT5G25930			Protein kinase family protein ...		Potri.006G235450 [exp]	2.44	0.9012
AT3G05650		AtRLP32	receptor like protein 32 (.1)		Potri.012G008911 [exp]	3.87	0.8986
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.017G017300 [exp]	4.24	0.8974	PtrGrx3
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.013G125000 [exp]	4.69	0.8915	Pt-ATEP3.1
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.014G167100 [exp]	4.89	0.8990
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	5.29	0.8825
AT5G05140			Transcription elongation facto...		Potri.006G035500 [exp]	7.34	0.8413
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	7.48	0.8965

Compare expression of checked genes

Potri.006G235500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.