Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 1073 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 680 / 0 HSL1 HAESA-like 1 (.1) AT5G65710 633 / 0 HSL2 HAESA-like 2 (.1) AT4G28490 630 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 578 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 566 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 549 / 2e-179 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 543 / 6e-177 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G72180 539 / 6e-176 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 529 / 4e-172 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057100 [exp] 1553 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 1307 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 1043 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 1018 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 976 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 762 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 692 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 662 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 661 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006028 [exp] 1243 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 1226 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10034978 [exp] 926 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 919 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10013968 [exp] 670 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 668 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 657 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10028232 [exp] 567 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027951 [exp] 556 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007232 [exp] 554 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G235800.1 pacid=42770300 polypeptide=Potri.006G235800.1.p locus=Potri.006G235800 ID=Potri.006G235800.1.v4.1 annot-version=v4.1 ATGTCCGAATTAACCATCCTATTTCTCAGAACTTCACCCCTCCTCTGCGTTCTAGTCCTACTTTCCCTGCCCTTCAGAGTAATTTCCCAAGATGCCAACA CTGAAAAAACTATCCTTCTAAAACTGAGACAACAACTTGGCAATCCATCGTCCATTCAGTCCTGGAACACATCATCCTCGCCGTGCAATTGGACAGGGGT AACCTGTGGAGGCGATGGCTCGGTGTCTGAACTTCACCTTGGTGATAAAAACATCACAGAAACAATCCCAGCAACAGTTTGTGACCTGAAAAACCTGACA TTTCTCGACATGAATTTCAACTACATTCCAGGAGGATTTCCAAAAGTTCTGTACAGTTGCACAAAGCTTCAGCACTTGGACCTGTCACAGAATTTTTTTG TCGGTCCAATACCTGATGATATTGATAAATTATCAGGTCTCAGGTATATAAACCTTGGAGGTAATAACTTCACAGGCAATATTCCACCACAGATAGGGAA CCTGACAGAGTTGCAGACATTGCATCTGTTTCAGAATCAGTTCAACGGTACGTTTCCTAAGGAGATTAGTAAGCTTTCCAATCTTGAAGTGCTGGGATTG GCGTTTAATGAGTTTGTGCCCTCTTCAATTCCTGTGGAGTTCGGTCAGCTAAAGAAGTTGTGGTTTTTGTGGATGAGACAATCGAATTTGATTGGTGAAA TACCGGAGAGCTTGACCAATCTTTCAAGTCTTGAGCACTTGGATTTAGCTATAAACGCTTTGGAAGGTAAGATTCCTGATGGGTTGTTTTCGTTGAAGAA TTTGACTAATTTGTATCTCTTCCAGAATAACTTGTCTGGTGAGATACCTCAGAGAGTCGAAACGTTGAATTTGGTGGAGATTGATCTTGCAATGAACCAA TTAAATGGTTCGATTCCAAAAGATTTTGGCAAGTTGAAGAAATTGCAATTTCTGAGTCTGTTAGACAATCACTTGTCCGGTGAGGTACCACCAAGTATAG GCCTTCTTCCTGCACTGACAACATTTAAGGTTTTTAGCAACAACTTGAGTGGAGCCTTGCCACCTAAAATGGGCCTTTCTTCAAAACTTGTAGAATTTGA TGTTGCAGCCAATCAATTCAGTGGCCAACTGCCTGAGAATTTATGTGCTGGAGGTGTCTTGCTGGGTGCAGTTGCCTTCGAAAACAATCTCTCTGGGCGG GTGCCTCAATCTCTTGGAAATTGCAACAGTTTGCACACGATTCAACTTTACAGCAACAGCTTTTCAGGTGAGATACCTGCAGGTGTTTGGACAGCCTCCA ATATGACTTACTTGATGTTAAGTGACAATTCCTTTTCGGGGGGACTTCCGAGCAAGCTGGCATGGAATTTGTCAAGGTTGGAACTCGGCAACAACAGATT TTCTGGTCCGATTCCTCCTGGAATCTCTAGCTGGGTGAACTTGGTTGATTTCAAGGCGAGCAACAATCTTCTTTCTGGTGAAATTCCTGTGGAAATAACG AGTCTGCCTCACCTTTCAAATCTTCTGCTTGATGGAAATCTATTTTCAGGTCAACTCCCATCCCAGATAATATCCTGGAAGTCATTGACTAGTTTAAATC TCTCAAGAAATGCACTTTCTGGCCAGATCCCAAAGGAGATTGGGTCTTTACCTGACCTGCTTTATTTAGATTTGTCTCAAAACCATTTTTCTGGTGAAAT CCCTCTTGAATTTGACCAGTTGAAACTGGTTTCTCTGAACTTGTCCTCCAATCATCTATCTGGGAAAATCCCAGATCAGTTTGATAACCATGCCTATGAT AACAGCTTCCTGAACAATTCTAATCTCTGTGCTGTTAATCCAATTCTAAACTTTCCAAATTGCTATGCTAAACTTCGCGACTCTAAAAAAATGCCCTCTA AAACTCTTGCCTTGATTCTGGCTCTTACTGTGACCATTTTTCTAGTCACTACGATAGTCACCTTGTTTATGGTTAGGGACTACCAAAGAAAGAAGGCAAA ACGTGATCTGGCAGCATGGAAGCTGACCTCGTTCCAGAGATTGGACTTCACAGAAGCAAACGTTTTGGCAAGTTTGACAGAAAATAATCTGATTGGAAGT GGAGGATCGGGGAAGGTATACCGGGTGGCCATAAACCGTGCAGGTGACTACGTTGCTGTCAAGAGGATTTGGAATAATGAAAAAATGGATCACAATCTTG AAAAGGAATTTTTGGCAGAGGTTCAGATACTGGGAACAATTAGGCATGCAAACATAGTTAAATTATTGTGCTGTATTTCAAGTGAGAGCTCAAAGCTTCT TGTTTATGAGTTCATGGAGAACCAAAGCCTTGATAGATGGCTTCATGGGAGGAAGAGAAGTTCATCAATGGGAACAAGTTCAGTCCATAATTCTGTCTTG GATTGGCCCACAAGGTTCCAGATTGCCATTGGAGCTGCACGAGGCCTAAGCTACATGCATCATGACTGCTCCACTCCTATCATTCATCGAGACGTGAAGT CTAGTAATATCTTGTTGGATTCTGAATTGAAGGCAAGAATAGCAGATTTTGGACTGGCCAGAATATTGGCTAAGCAAGGAGAGGTTCATACCATGTCTGT TGTAGCAGGTTCTTTCGGTTATATGGCCCCTGAGTATGCCTATACGACAAGGGTGAATGAAAAGATAGATGTCTATAGCTTTGGAGTTGTACTCCTGGAA TTGGCGACTGGAAGAGAACCTAATAGTGGAGATGAGCATACCAGCCTTGCAGAGTGGGCATGGCAGCAGTTTGGACAGGGAAAGCCTGTTGTTGATTGCC TTGACCAGGAGATTAAGGAACCATGTTTCTTGCAAGAAATGACCACTGTATTCAACCTAGGACTCATTTGCACGCACTCCTCGCCATCCACCAGACCTTC TATGAAGGAGGTTTTGGAGATTCTGCGTCGAGTTTCTGCAGACAGTAATGGAGAGAAAAAGACAGGTGCCGAGCTTGATGTTGTTCCTCTTCTTGGAACA GTAACTTATCTTTCTGCCACAACGCAGCACGAGACGGCCAGATGA
AA sequence Show only first row Show all	>Potri.006G235800.1 pacid=42770300 polypeptide=Potri.006G235800.1.p locus=Potri.006G235800 ID=Potri.006G235800.1.v4.1 annot-version=v4.1 MSELTILFLRTSPLLCVLVLLSLPFRVISQDANTEKTILLKLRQQLGNPSSIQSWNTSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNLT FLDMNFNYIPGGFPKVLYSCTKLQHLDLSQNFFVGPIPDDIDKLSGLRYINLGGNNFTGNIPPQIGNLTELQTLHLFQNQFNGTFPKEISKLSNLEVLGL AFNEFVPSSIPVEFGQLKKLWFLWMRQSNLIGEIPESLTNLSSLEHLDLAINALEGKIPDGLFSLKNLTNLYLFQNNLSGEIPQRVETLNLVEIDLAMNQ LNGSIPKDFGKLKKLQFLSLLDNHLSGEVPPSIGLLPALTTFKVFSNNLSGALPPKMGLSSKLVEFDVAANQFSGQLPENLCAGGVLLGAVAFENNLSGR VPQSLGNCNSLHTIQLYSNSFSGEIPAGVWTASNMTYLMLSDNSFSGGLPSKLAWNLSRLELGNNRFSGPIPPGISSWVNLVDFKASNNLLSGEIPVEIT SLPHLSNLLLDGNLFSGQLPSQIISWKSLTSLNLSRNALSGQIPKEIGSLPDLLYLDLSQNHFSGEIPLEFDQLKLVSLNLSSNHLSGKIPDQFDNHAYD NSFLNNSNLCAVNPILNFPNCYAKLRDSKKMPSKTLALILALTVTIFLVTTIVTLFMVRDYQRKKAKRDLAAWKLTSFQRLDFTEANVLASLTENNLIGS GGSGKVYRVAINRAGDYVAVKRIWNNEKMDHNLEKEFLAEVQILGTIRHANIVKLLCCISSESSKLLVYEFMENQSLDRWLHGRKRSSSMGTSSVHNSVL DWPTRFQIAIGAARGLSYMHHDCSTPIIHRDVKSSNILLDSELKARIADFGLARILAKQGEVHTMSVVAGSFGYMAPEYAYTTRVNEKIDVYSFGVVLLE LATGREPNSGDEHTSLAEWAWQQFGQGKPVVDCLDQEIKEPCFLQEMTTVFNLGLICTHSSPSTRPSMKEVLEILRRVSADSNGEKKTGAELDVVPLLGT VTYLSATTQHETAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	1.00	0.9973
AT5G25930			Protein kinase family protein ...		Potri.006G235450 [exp]	1.41	0.9094
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.013G125000 [exp]	2.82	0.8941	Pt-ATEP3.1
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.017G017300 [exp]	2.82	0.9017	PtrGrx3
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	3.46	0.9051
AT3G05650		AtRLP32	receptor like protein 32 (.1)		Potri.012G008911 [exp]	3.46	0.8997
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	5.00	0.8997
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	6.48	0.8980	Pt-LHT1.2
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	8.94	0.8773
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270600 [exp]	9.79	0.8792

Compare expression of checked genes

Potri.006G235800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.