Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16360 199 / 1e-66 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G29350 129 / 8e-39 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 123 / 1e-36 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G03430 119 / 5e-35 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G21510 109 / 2e-31 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G80100 69 / 2e-15 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 61 / 2e-12 two-component phosphorelay mediator, putative (.1) AT5G19710 60 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046800 [exp] 265 / 6e-93 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.001G189900 [exp] 214 / 1e-72 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.013G028300 [exp] 135 / 3e-41 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 132 / 2e-40 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 123 / 9e-37 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G098200 [exp] 123 / 9e-37 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.008G197600 [exp] 122 / 3e-36 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.010G027100 [exp] 115 / 2e-33 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.003G032400 [exp] 105 / 2e-29 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025821 [exp] 191 / 3e-63 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10038280 [exp] 190 / 6e-63 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10012777 [exp] 130 / 2e-39 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 129 / 5e-39 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 122 / 3e-36 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 120 / 1e-35 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10003256 [exp] 107 / 2e-30 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10035596 [exp] 106 / 5e-30 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10023127 [exp] 106 / 5e-30 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10011487 [exp] 105 / 4e-29 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [poplar] [flax] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Potri.006G236300.1 pacid=42769200 polypeptide=Potri.006G236300.1.p locus=Potri.006G236300 ID=Potri.006G236300.1.v4.1 annot-version=v4.1 ATGGACAGAAAACAATTGCAACACCAGGTCGCCTCCACGAGGAGGTCCCTGTTTGATCAGGGATACCTTGACGACCAATTCATTCAGCTCGAGCATTTGC AAGATGAAGCAAACCCAAATTTTGTCGAGGAAGTTGTGAGACTGTTTTACAGTGATTCAGTTAGATTGATTCAGAACATTGAGCAGGCGATGATCAATAA GCCTAATATTGATTTTGGTAAGCTGGATGACTACATGCATCAGTTCAAGGGTAGCAGCTCAAGCATTGGAGCTAAGAAGGTGATGAAGGAATGCTCAAAG TTCAGGGAATATTGTTATGCAGGAAACATCGAAGGATGCATCAAGACATTTCAGCTACTCAAGCAAGAGCATGCCACTTTGAGGAGGAAGCTAGAGACTT ACTTTCAGCTGGTAAAACAAGCTGGACTAGCCGAGAGTGCCTGA
AA sequence Show only first row Show all	>Potri.006G236300.1 pacid=42769200 polypeptide=Potri.006G236300.1.p locus=Potri.006G236300 ID=Potri.006G236300.1.v4.1 annot-version=v4.1 MDRKQLQHQVASTRRSLFDQGYLDDQFIQLEHLQDEANPNFVEEVVRLFYSDSVRLIQNIEQAMINKPNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSK FREYCYAGNIEGCIKTFQLLKQEHATLRRKLETYFQLVKQAGLAESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.006G236300 [exp]	0	1
AT2G04240		XERICO	RING/U-box superfamily protein...		Potri.014G170400 [exp]	2.82	0.9290
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.002G142800 [exp]	4.24	0.9069
AT1G74780			Nodulin-like / Major Facilitat...		Potri.012G072101 [exp]	4.89	0.9115
					Potri.005G193600 [exp]	5.00	0.9170
AT5G28010			Polyketide cyclase/dehydrase a...		Potri.004G051500 [exp]	7.74	0.8276
AT2G30600			BTB/POZ domain-containing prot...		Potri.005G251300 [exp]	9.38	0.8828
					Potri.016G031166 [exp]	10.90	0.9138
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	11.31	0.8649
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.001G242600 [exp]	12.32	0.8586
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.005G236102 [exp]	14.38	0.8498

Compare expression of checked genes

Potri.006G236300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.