Plant FIBer expression Database

Potri.006G236400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25740 587 / 0 ATP-dependent protease La (LON) domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G046700
[exp]
868 / 0 AT2G25740 574 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005481
[exp]
578 / 0 AT2G25740 588 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence
>Potri.006G236400.2 pacid=42768788 polypeptide=Potri.006G236400.2.p locus=Potri.006G236400 ID=Potri.006G236400.2.v4.1 annot-version=v4.1
ATGGACGACGTTAGAATTTTAGAGGCAGAGAGGCGCCGGATTCAAGAGCTTGAATTCGAAGAATTACAGGTCGAGGAAGAAGTCGATGGTCGTGATTCCA
CTGGTGCTGGTTCATCTGATGATTTCACCTTCAACCCTTGTTTGGCTTCACTGCATACTTATCTTGGCGAGGTTGAAGACACTCATCATAGACTGGCTTT
TTTGGATGGAGGTGCCGTTTTGAACCTTCCATTGTTCTATCTTGAAGGAGTTGTTCTTTTCCCAGAGGCTACACTTCCTTTGAGAGTTGTTCAACCCAAT
TTCATTTCTGCTGTTGAGAGGGCATTGGTTCAAGTAGATAATCCTTTTATTGTAGGTGTGGTTCGTGCATACAGGGGTTCTGATTCGGATAACAGACAAT
TAAGGTTTGCAACTGTTGGGACAACTGCAGAGATTCGACAATACCGGCGATTAGAGGATGGATCACTGAATGTAGTTACTCGTGGCCAGCAGCGGTTTCA
TCTAAAACATCGTTGGATTGATGTGGAAGGAATGCCCTGTGGAGAGGTTCAAATCATCCAGGAAGATATTCCGTTAAGGACACCCAAGGATGCTTTTGGA
AAATTGGCACCATTAAGTAATCTACGCAGTCATAGGCTCTCACGTGTGCTGCCTTCACTTGGATATGGGCATAGCGACAATGATTCAGAGGCAAATTCGG
ATGACAGCTTCGAGAATGCGCTCTCATCAGCAGGCATGAGAACTCACCAGTCTGCACTCGATTCCTGTTATGGTTATGATGTGATGGATGAATCAACTAG
CAGCGATGATGACAAGTTCTTGAGTCAGACAGAAATGAGATCTACAAGATCTCACCTAAATGAGTCAAAAGGGCCATTGTACTCGGACACTGGAAAAAAT
GCTGATAATACTACCTTAGAGATTGGGAATAGTTCTGATTTGGCAAAGAAAGGGGAAGGGTCAAAGAGGTGTTGGAAAAATACTGACTTAAACCACTTTC
ACAGGGTTCCAAGAGCCTTCTGGCCCCACTGGGTATACCGTATGTATGACTCCTATTGTCTTGCTGAAAGAGCAGCAGATATGTGGAAACAGATAGTTGG
GGCACCAAGCATGGATGGTCTTGTGAGAAAGCCTGACCTTTTGTCATTTTATATTGCCAGTAAAATTCCTGTTTCTGAAGAGACCAGGCAGGAGCTTCTG
GAGATTGATGGCATTTCATATAGACTGCGCCGGGAAATTGGTTTACTTGAAAGTTTTGACCTTGTTCAATGTAAAACTTGTAAGACTGTAATCGCTCAGC
GGAGTGATATGTTGGTGATGTCTACTGAAGGTCCTCTTGGTGCTTATGTCAATTCACATGGTTATGTGCATGAGATAATGACACTCCAGAAAGCTAATGG
GTTAGCACTCATAGGGCGAGCCACTGTGGAATACAGCTGGTTTCCTGGGTATGCTTGGACAATCGCAGAATGTGCCTCCTGTGAAACCCAGATGGGGTGG
CTTTTTACTGCCACGAAGAAGAAGTTGAAGCCTCAATCGTTTTGGGGAATACGGAGTTCCCAGGTTGCTGATGATACACGGTAG
AA sequence
>Potri.006G236400.2 pacid=42768788 polypeptide=Potri.006G236400.2.p locus=Potri.006G236400 ID=Potri.006G236400.2.v4.1 annot-version=v4.1
MDDVRILEAERRRIQELEFEELQVEEEVDGRDSTGAGSSDDFTFNPCLASLHTYLGEVEDTHHRLAFLDGGAVLNLPLFYLEGVVLFPEATLPLRVVQPN
FISAVERALVQVDNPFIVGVVRAYRGSDSDNRQLRFATVGTTAEIRQYRRLEDGSLNVVTRGQQRFHLKHRWIDVEGMPCGEVQIIQEDIPLRTPKDAFG
KLAPLSNLRSHRLSRVLPSLGYGHSDNDSEANSDDSFENALSSAGMRTHQSALDSCYGYDVMDESTSSDDDKFLSQTEMRSTRSHLNESKGPLYSDTGKN
ADNTTLEIGNSSDLAKKGEGSKRCWKNTDLNHFHRVPRAFWPHWVYRMYDSYCLAERAADMWKQIVGAPSMDGLVRKPDLLSFYIASKIPVSEETRQELL
EIDGISYRLRREIGLLESFDLVQCKTCKTVIAQRSDMLVMSTEGPLGAYVNSHGYVHEIMTLQKANGLALIGRATVEYSWFPGYAWTIAECASCETQMGW
LFTATKKKLKPQSFWGIRSSQVADDTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25740 ATP-dependent protease La (LON... Potri.006G236400
[exp]
0 1
AT1G20950 Phosphofructokinase family pro... Potri.010G106950
[exp]
6.32 0.9009
AT1G44760 Adenine nucleotide alpha hydro... Potri.002G084600
[exp]
6.63 0.9099
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.017G023200
[exp]
10.00 0.8696
AT1G69380 RRG RETARDED ROOT GROWTH, Protein ... Potri.008G092400
[exp]
10.39 0.8303
AT5G39590 TLD-domain containing nucleola... Potri.002G025032
[exp]
11.22 0.8993
AT3G09780 CCR1, ATCRR1 CRINKLY4 related 1 (.1) Potri.006G128350
[exp]
13.26 0.8943
AT2G39570 ACR9 ACT domain repeats 9, ACT doma... Potri.001G237100
[exp]
15.74 0.7828
AT5G05460 AtENGase85A Endo-beta-N-acetyglucosaminida... Potri.008G072901
[exp]
17.74 0.8836
AT4G21520 Transducin/WD40 repeat-like su... Potri.004G034600
[exp]
18.97 0.8239
Potri.004G169000
[exp]
21.02 0.8632

Potri.006G236400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.