Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25880 945 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT1G79750 932 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 924 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G19900 910 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT2G13560 419 / 2e-139 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 412 / 4e-137 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046600 [exp] 1048 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 949 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 935 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 935 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 417 / 8e-139 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 414 / 1e-137 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G079900 [exp] 411 / 9e-137 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 407 / 7e-135 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025823 [exp] 939 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10043025 [exp] 915 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10011125 [exp] 907 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 902 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10037561 [exp] 858 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 858 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 856 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 801 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10034963 [exp] 694 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 684 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [poplar] [flax] AA_dh_N PF00390 [poplar] [flax] malic Malic enzyme, N-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03949 [poplar] [flax] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G236500.1 pacid=42767719 polypeptide=Potri.006G236500.1.p locus=Potri.006G236500 ID=Potri.006G236500.1.v4.1 annot-version=v4.1 ATGATTTCAAGACAGACTTTTCTGAGAGCAGTGGTTCTTGGTTGTGGAGGAGAAAGAAAGGTTTGGGCTTTATTAGAGAGAAGAACAATGATGAACGGAG TGGAGAAAACGAATGGAGAAGATGTTGCCACGGAGGAACAGCTTATCACTCCATGGACTGTCTCTGTTGCTAGTGGATATACTTTGTTGAGGGATCCACG CCACAACAAAGGGCTTGCCTTTACTGAGAATGAAAGGGATGCACATTACTTGCGTGGCCTTTTGCCTCCAGCACTCATGACCCAGGAACTCCAGGAGAAA AAATTGATGCACAACCTACGCCAGTATGAAGTTCCTCTTCAACGATACATGGCCATGATGGATCTCCAGGAGAGGAATGAAAGGTTGTTTTACAAGCTTT TGATCGATAATGTGGAGGAACTTTTGCCAGTTGTGTACACTCCTACAGTTGGCGAGGCTTGTCAGAAATATGGGAGCATTTTCAGACGCCCTCAGGGTCT TTACATCAGTTTGAAAGAGAAGGGCAAGATTCTTGAAGTGTTGAAGAATTGGCCGGAGAGTAATATCCAAGTTATTGTTGTTACTGATGGTGAGCGCATC TTGGGGCTTGGGGATCTTGGTTGCCAGGGAATGGGGATTCCAGTAGGAAAACTCTCTCTGTATACAGCACTAGGAGGATTACGTCCCTCTGCCTGCTTGC CTGTAACAATTGATGTTGGCACAAACAATGAGAAGTTATTGAATGATGAGTTCTACATTGGGCTTAGACAGAGGAGGGCAACTGGACAGGAATATGCAGA GCTTCTAGAAGAGTTCATGACTGCAGTTAAGAAGAACTACGGGGAAAAGGTCCTTGTACAGTTCGAAGATTTTGCAAATCACAATGCATTTGAGCTACTG GAAAAATACAGCCCAACTCATCTTGTCTTCAATGATGACATACAGGGCACTGCATCTGTGGTGTTGGCAGGGCTTCTTGCAGCTCTGAAATTGGTTGGTG GAGCCTTGGCGGACCATAGATTCTTATTCCTGGGTGCAGGAGAGGCTGGAACTGGTATAGCTGAGCTTATCGCTCTTGAGATATCAAAACAGACTAAAGC TCCACTTGAAGAGACCCGCAAAAAGATTTGGCTTGTGGACTCAAAGGGACTGATTGTTAGCTCGCGTAAGGAGTCACTTCAACACTTCAAGAAACCTTGG GCTCATGACCATGAGCCTGTCAAAGGGCTCTTAGATGCTGTTAAGGCAATCAAGCCAACAGTTTTGATAGGATCATCTGGAGTTGGGAAAACATTTACAA AGGAGGTGGTTGAGGCCATGGCATCAATTAACGAGAAACCGCTAATTCTTGCTCTCTCCAATCCTACCTCACAATCTGAATGTACGGCTGAAGAAGCTTA TACATGGAGCAAGGGTCGTGTAATCTTTGCTAGCGGAAGCCCATTTGACCCTGTTGAATATAACAGAAAAGTTTTTGTACCTGGCCAGGCAAACAATGCT TATATATTCCCTGGATTTGGGTTGGGATTGATCATGTCCGGTGCAATTCGCGTGCATGATGACATGCTTTTGGCAGCTTCTGAAGCTCTGGCTGCACAAG TAAAACAAGAACATTTTGACAAGGGGCTGATTTACCCACCATTTTCCAACATTCGAAATATATCAGCCAACATCGCAGCTAAGGTTGCTGCTAAAGCGTA TGAACTCGGTCTGGCATCTCGTCTCCCTCGTCCTAAAGACCTTGTCAAGTATGCAGAGAGCTGCATGTACAGCCCAGTCTACCGAAGCTATCGTTAA
AA sequence Show only first row Show all	>Potri.006G236500.1 pacid=42767719 polypeptide=Potri.006G236500.1.p locus=Potri.006G236500 ID=Potri.006G236500.1.v4.1 annot-version=v4.1 MISRQTFLRAVVLGCGGERKVWALLERRTMMNGVEKTNGEDVATEEQLITPWTVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMTQELQEK KLMHNLRQYEVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPESNIQVIVVTDGERI LGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYAELLEEFMTAVKKNYGEKVLVQFEDFANHNAFELL EKYSPTHLVFNDDIQGTASVVLAGLLAALKLVGGALADHRFLFLGAGEAGTGIAELIALEISKQTKAPLEETRKKIWLVDSKGLIVSSRKESLQHFKKPW AHDHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVEAMASINEKPLILALSNPTSQSECTAEEAYTWSKGRVIFASGSPFDPVEYNRKVFVPGQANNA YIFPGFGLGLIMSGAIRVHDDMLLAASEALAAQVKQEHFDKGLIYPPFSNIRNISANIAAKVAAKAYELGLASRLPRPKDLVKYAESCMYSPVYRSYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Potri.006G236500 [exp]	0	1
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.006G214500 [exp]	1.41	0.9782
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	2.64	0.9788
					Potri.001G045301 [exp]	4.89	0.9768
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	5.19	0.9775
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	6.48	0.9728
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355200 [exp]	8.88	0.9468
AT4G23050			PAS domain-containing protein ...		Potri.001G108900 [exp]	13.26	0.9654
					Potri.009G093600 [exp]	14.49	0.9283
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	15.32	0.9744
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.015G074500 [exp]	17.23	0.9712

Compare expression of checked genes

Potri.006G236500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.