Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 1095 / 0 Protein kinase family protein (.1.2) AT3G13670 1019 / 0 Protein kinase family protein (.1) AT3G03940 977 / 0 Protein kinase family protein (.1) AT5G18190 966 / 0 Protein kinase family protein (.1) AT3G03930 367 / 7e-124 protein kinase-related (.1) AT4G26100 202 / 2e-58 CKL1, CK1 casein kinase 1 (.1) AT2G19470 201 / 3e-58 CKL5 casein kinase I-like 5 (.1) AT1G03930 199 / 3e-57 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT3G23340 199 / 3e-57 CKL10 casein kinase I-like 10 (.1) AT5G57015 197 / 2e-56 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046400 [exp] 1226 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 1073 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 1068 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 1055 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 1052 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 992 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.018G065900 [exp] 206 / 1e-59 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 205 / 3e-59 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 204 / 1e-58 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005479 [exp] 1143 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 1047 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 1040 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 1033 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10026214 [exp] 1000 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10014152 [exp] 991 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 979 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 911 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 897 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 895 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G236600.6 pacid=42768656 polypeptide=Potri.006G236600.6.p locus=Potri.006G236600 ID=Potri.006G236600.6.v4.1 annot-version=v4.1 ATGGACGAGTATGATAGCGGCGGCGGACGGAGCGCCGACAAGGGAACGGGAGCGGAAGATGAAGGAAGCACTGCTCCTCTTCCCGAGAAGGTCCAAGTTG GTGGTTCTCCAACGTACAAAATAGATAGAAAACTGGGTAAAGGAGGTTTTGGACAGGTTTATGTTGGTCGAAGAATTGGTCCCACTAATTTTTCAAATGA AAGAACTGGTCCTGGAGCTTTAGAGGTAGCATTAAAATTTGAGCATAGAAGCAGCAAAGGATGTAATTATGGACCACCTTATGAGTGGCAAGTTTACAAT GCACTTGGGGGCAGTCATGGTGTGCCACGAGCTCATTACAAAGGAAGGCAGGGTGACTACTATGTTATGGTTATGGATATGCTTGGACCTAGTCTATGGG ATGTTTGGAATAACAACTCACACACGATGTCCATTGATATGGTTGCTTGCATTGCCATTGAAGCCATCTCTATACTTGAAAAGATGCATTCTAGAGGATA TGTCCATGGGGATGTGAAACCTGAAAACTTTTTACTTGGTCCACGAGGAACTCCTGAAGAAAAAAAGCTGTTTCTTGTTGACCTTGGATTAGCAACCCGG TGGAGAGATAGTTCAACTGGTCTTCATGTTGAATATGATCAACGCCCAGATGTTTTTAGGGGAACTGTGCGATATGCCAGTGTTCATGCTCATCTTGGTA GAACTGGTAGCAGGAGAGATGATTTAGAATCTCTTGCCTACACTCTCATCTTTCTTCTCCGCGGTCGACTGCCTTGGCAAGGATACCAGGGGGACAATAA AGGGTTCCTTGTTTGCAAGAAGAAGATGGCGACTTCTCCAGAAGCTTTGTGTTCCTTCTGCCCTCAGCCTTTTAGACAGTTTGTTGAGCATGTTGTAAAT CTGAAGTTTGATGAAGAGCCAAATTATGCAAAATATATCTCCCTTTTTGATGGAATTGTTGGTCCAAATCCAGACATAAGACCTATTAACACTGACGGTG CTCAGAAGCTTATATATCAGGTTGGGAATAAGAGAGGGCGGCTGACAATGGAGGAAGAAGAAGATGAACAACCAAAGAAAAAGCTCAGGATGGGGATGCC TGCAACACAGTGGATTAGTGTTTATAATGCTCGTCGGCCTATGAAACAAAGATATCACTATAACGTGGCTGATGTGAGGCTCTCCCAACACATAGAGAAG GGTAATGAAGATGGATTATTTATCAGCAGCGTGGCTTCTTGCTCAAACCTATGGGCCTTAATTATGGACGCTGGCACTAATTTCAGTGCTCAAGTTTATG AGCTCTCTCCTTATTTTCTCCACAAGGAATGGATAATGGAACAGTGGGAGAAGAATTATTACATTAGTGCAATTGCAGGAGCTAATAATGGGAGTTCATT AGTTGTGATGTCTAAGGGTACTCAGTATTTACAGCAGTCTTATAAAGTAAGCGATTCTTTTCCCTTCAAGTGGATAAATAAGAAATGGAGAGAGGGTTTT TATGTCACAGCTATGGCCACTGCTGGAAGTAGATGGGCGATAGTTATGTCTCGCGGCACAGGATTTTCAGACCAGGTTGTGGAGCTGGATTTTCTATATC CCAGTGAAGGCATTCATCGTAGGTGGGATGGTGGTTACCGCATCACTTCAACTGCAGCAACGTGTGACCAAGCTGCTTTTGTTCTCAGTGTGCCAAGAAG AAAACCAGTAGATGAAACTCAAGAAACACTTCGTACTTCTGCTTTTCCCAGTACACACGTCAAGGAGAAATGGGCAACAAATCTTTATATTGCATCTGTT TGTTATGGTCGAACTGTCTCATGA
AA sequence Show only first row Show all	>Potri.006G236600.6 pacid=42768656 polypeptide=Potri.006G236600.6.p locus=Potri.006G236600 ID=Potri.006G236600.6.v4.1 annot-version=v4.1 MDEYDSGGGRSADKGTGAEDEGSTAPLPEKVQVGGSPTYKIDRKLGKGGFGQVYVGRRIGPTNFSNERTGPGALEVALKFEHRSSKGCNYGPPYEWQVYN ALGGSHGVPRAHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIDMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPRGTPEEKKLFLVDLGLATR WRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMATSPEALCSFCPQPFRQFVEHVVN LKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYQVGNKRGRLTMEEEEDEQPKKKLRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEK GNEDGLFISSVASCSNLWALIMDAGTNFSAQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGF YVTAMATAGSRWAIVMSRGTGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATCDQAAFVLSVPRRKPVDETQETLRTSAFPSTHVKEKWATNLYIASV CYGRTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Potri.006G066300 [exp]	3.46	0.8218
AT1G04590		EMB2748	unknown protein		Potri.016G103000 [exp]	4.24	0.8417
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	6.00	0.8384
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	7.74	0.8308
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	7.74	0.7988
AT5G09580			unknown protein		Potri.001G285000 [exp]	8.71	0.8327
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	9.16	0.7937
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	9.64	0.8332
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	9.79	0.7822
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	11.53	0.8070

Compare expression of checked genes

Potri.006G236600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.