Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32870 180 / 8e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G25770 139 / 2e-42 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236800 [exp] 297 / 5e-104 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 229 / 1e-77 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.018G046100 [exp] 155 / 1e-48 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G063900 [exp] 62 / 2e-12 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237050 [exp] 59 / 1e-11 AT4G32870 0 / 1 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006042 [exp] 162 / 1e-51 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10000573 [exp] 148 / 6e-46 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10005477 [exp] 140 / 8e-43 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10026898 [exp] 87 / 2e-22 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10028262 [exp] 62 / 2e-12 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040227 [exp] 62 / 6e-12 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF10604 [poplar] [flax] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.006G237000.1 pacid=42770420 polypeptide=Potri.006G237000.1.p locus=Potri.006G237000 ID=Potri.006G237000.1.v4.1 annot-version=v4.1 ATGACAGAAGAAACACAAGCCAAATGGGAAGGCAAGGCCACGGTTGAGCTAAGAGGCCCAACAGCAGACCAAGTATGGCCTTGCTTGGAGGACTTCTGTA ATCTACAAAAGTGGCTTCCACGAGTGGATACATGCTACCGAGTTGAGGGTGAGCTAGGACAACCTGGCCTGGTTCGGTGCTGCAATTTTAGCAAAGTACC ATCGGAAGGGAGTCATGAAGATGAAGAGAATAAGGTCATCTGGGCCAAAGAGAAGCTAATAATGATCAATCCAAGCGAACGGTGTCTAAGCTATGAGATC CTTGAAAATAACGCTGGATTCAAGTCATATGTGGCCACCATGAAAGTATCGCCAATCAACGATGGAGATGGGGATGGTCAACATGGGTGCACGATCGAGT GGTCCTTCATAGCTGATCCAATTGAAGGGTGGCCATTGGAGGATTTCAATTCCTATATTAATTCCTCTCTCCAGTTCATGGGGAAAAAAATGGAACGGGA TGTCCTATCTAGATAA
AA sequence Show only first row Show all	>Potri.006G237000.1 pacid=42770420 polypeptide=Potri.006G237000.1.p locus=Potri.006G237000 ID=Potri.006G237000.1.v4.1 annot-version=v4.1 MTEETQAKWEGKATVELRGPTADQVWPCLEDFCNLQKWLPRVDTCYRVEGELGQPGLVRCCNFSKVPSEGSHEDEENKVIWAKEKLIMINPSERCLSYEI LENNAGFKSYVATMKVSPINDGDGDGQHGCTIEWSFIADPIEGWPLEDFNSYINSSLQFMGKKMERDVLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237000 [exp]	0	1
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.017G029100 [exp]	9.16	0.5835
AT5G17240		SDG40	SET domain group 40 (.1)		Potri.004G081400 [exp]	13.41	0.6159
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.003G159000 [exp]	14.42	0.5285	ERF1.5
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	15.62	0.6165
AT5G64010			unknown protein		Potri.005G064951 [exp]	17.74	0.6024
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	25.19	0.6081
AT4G35940			unknown protein		Potri.009G134800 [exp]	29.12	0.6005
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	36.48	0.5880	RHC1.2
AT1G55915			zinc ion binding (.1)		Potri.008G009700 [exp]	61.62	0.5771
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.008G107200 [exp]	62.92	0.5375

Compare expression of checked genes

Potri.006G237000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.