Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25790 885 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 480 / 1e-153 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 461 / 3e-146 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 455 / 2e-144 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 444 / 8e-140 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 427 / 8e-134 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 409 / 4e-127 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 409 / 2e-126 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT3G24240 407 / 9e-125 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 399 / 4e-123 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G045500 [exp] 1496 / 0 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 492 / 5e-158 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G048800 [exp] 489 / 5e-157 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 480 / 1e-153 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 454 / 1e-143 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 434 / 3e-136 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 430 / 1e-134 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 427 / 5e-134 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G049100 [exp] 412 / 6e-128 AT1G28440 1387 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006045 [exp] 996 / 0 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011609 [exp] 991 / 0 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 464 / 2e-147 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 462 / 2e-146 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10025943 [exp] 445 / 2e-140 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039641 [exp] 444 / 2e-139 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 436 / 1e-136 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 426 / 8e-133 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10011576 [exp] 416 / 9e-131 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027221 [exp] 418 / 9e-130 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G237400.1 pacid=42767493 polypeptide=Potri.006G237400.1.p locus=Potri.006G237400 ID=Potri.006G237400.1.v4.1 annot-version=v4.1 ATGTTATCATCAATGGCAGCCGCAAAAGGGCCTCAAGCATGTTCAATGCTGTTCATGTTCTGGTTCTTGGTCTTGAATTCTCGCATGTTGCATGCTGACA ATCAGGAACTTGAGCTTCTCTTGTCTTTCAAATCTTCCCTAAATGACCCTTTGAAGTATCTCTCAAACTGGAACCCCTCTGCCACTTTTTGCAAGTGGCA AGGTATCACTTGCACCAACTCCTCTCGCATTACTGTGATTGAGCTCTCAGGGAAAAACATCTCTGGCAAGATTTCCTCTTCAATCTTTCAGTTGCCATAT ATTCAAACTATTGATCTCTCAAGCAATCAGCTTTCTGGTAAACTTCCTGATGATATATTCTCTAGCTCCTCACTTAGGTTCCTCAATCTTAGCAACAATA ATTTCACTGGCCCAATACCAAATGGCTCAATATTTCTCCTGGAAACATTGGATCTATCCAATAATATGCTGTCCGGGAAAATTCCTCAAGAAATAGGATC CTTTTCGAGTCTTAAATTTCTTGATCTTGGTGGCAATGTTTTGGTGGGCAAAATTCCTCTCTCAGTAACAAACTTGACGAGTTTGGAAGTCTTGACTTTG GCTTCTAACCAATTAGTTGGCCAAATTCCAAGTGAATTAGGCCAAATGAGAAGCTTGAAGTGGATTTACTTGGGCTATAACAATCTTTCTGGTGAAATTC CAATAGAACTAGGCCAGTTAACTTCTTTGAATCATCTTGATCTTGTCTACAACAATCTCACTGGACAAATCCCATCATCTCTAGGAAACCTCAGTAATCT TCAGTACCTCTTTCTCTACCAAAACATGCTTGCTGGTCCGATTCCTAAATCCATTTTTGGTCTCACGAAGTTGATTTCACTTGATCTTAGTGATAATTCT CTATCCGGTGAGATCCCAGAACTCATAATTAAGTTGAAAAATTTGGAGATTCTTCATCTTTTCTCCAACAACTTCACTGGGAAAATCCCTGTTGCTTTGA GCTCCTTGCCTCGTCTTCAAATCCTTCAACTTTGGTCTAACAAGTTGTCTGGTGAGATTCCAAAAGATCTTGGAAAGCGAAACAATCTCACTGTACTAGA CCTTTCCAGCAATTCTCTCACTGGAAGAATACCAGAAGGCCTGTGCAGTTCTGGCAATCTCTTTAAGCTCATTCTCTTCTCCAATTCACTTGAAGATGAA ATCCCAAAGAGTTTGAGTACTTGCAACAGCTTGCGGCGTGTACGTCTCCAAGATAACAGCTTGTCTGGTGAATTATCATCAGAATTCACCAAACTTCCAC TTGTGTACTTCTTGGATATCTCTTCCAACAATCTTTCAGGCAGGATTGACTCTAGAAAATGGGAGATGCCTTCACTTCAAATGCTGAGTTTGGCAAGAAA CAGTTTTTTGGGGGGCTTGCCAGACTCATTCGGCAGCGAGAATCTTGAGAATTTAGACCTGTCTCAAAATCTGTTCTCGGGTGCTATTCCACGTAAGTTT GGCAGCTTGTCAGAGATAATGCAGCTGAGGCTAAGCAAAAACAAGATCTCTGGTGAAATCCCAGACGAGCTGTCTTCATGCGAAAAGCTTGTGAGTCTAG ACCTTAGTCACAACAAGCTCAGTGGCCAAATCCCTGCTAGTTTCTCTGAAATGCCAGTTCTTGGTCTGCTTGATTTGTCACACAATGAACTATCCGGCAA AATACCAGCCAATTTGGGAAGAGTAGAATCGCTTGTTCAAGTAAACATCTCTCACAATCATTTTCATGGTAGTTTACCCTCCACAGGAGCATTTCTTGCC ATAAATGCAAGTGCTATTGCCGGTAATGATCTTTGTGGCGGTGATAAGACTAGCGGCTTGCCTCCATGCAGAAGGGTCAAGAGTCCTATGTGGTGGTTTT ATGTTGCATGTAGTCTTGGTGCTCTAGTGCTGCTTGCTCTTGTTGCTTTTGGATTTGTTTTCATTCGAGGGCAAAGGAATTTGGAGCTAAAAAGAGTCGA AAACGAAGACGGGACATGGGAGTTGCAATTCTTCAATTCTAAGGTATCAAAATCAATAGCAATTGATGATATTTTATTGTCCATGAAAGAAGAAAATTTG ATTTCTAGAGGCAAGAAAGGAGCTTCATACAAAGGGAAGTCCATCACAAACGACATGGAATTCATCGTAAAGAAAATGAACGATGTGAACTCAATTCCGC TGTCCGAAATTTCTGAACTTGGAAAGCTCCAGCATCCAAACATTGTCAACTTATTTGGATTATGTCAGTCCAATAAGGTTGCATATGTAATATATGAGTA CATCGAAGGAAAAAGTTTGAGTGAAGTTCTTCTGAACCTAAGTTGGGAACGACGGCGAAAAATTGCAATCGGGATCGCAAAAGCTCTCCGGTTCCTGCAT TGTTATTGTTCGCCGAGTGTTCTTGCTGGTTACATGTCACCGGAGAAAATTATCATTGATGGAAAAGATGAGCCTCGTCTCATATTAAGCCTTCCCAGCC TGCTTTGCATCGAAACCACCAAGTGCTTCATTTCTTCAGCCTATGTCGCCCCAGAAACCAGAGAAACCAAGGACATCACTGAAAAGAGTGACATGTATGG ATTTGGCCTCATCCTTATCGAATTATTAACCGGAAAAGGCCCGGCAGATGCTGAATTTGGCGGGCATGAGAGCATCGTCGAGTGGGCGCGGTATTGCTAC TCGGATTGTCATCTAGATATGTGGATCGATCCAATGATAAGTGGGAATGCATCGATTAATCAGAATGAGTTGATCGAAACGATGAATTTGGCTCTACAAT GCACAGCTACCGAGCCCACAGCACGACCATGTGCAAATGAAGTATCCAAAACCCTAGAGTCTGCTTTAAGGAAAAGTTCTTGTGTACTAGGCCTAAAGTT TTCTTCCCTTTTTTAG
AA sequence Show only first row Show all	>Potri.006G237400.1 pacid=42767493 polypeptide=Potri.006G237400.1.p locus=Potri.006G237400 ID=Potri.006G237400.1.v4.1 annot-version=v4.1 MLSSMAAAKGPQACSMLFMFWFLVLNSRMLHADNQELELLLSFKSSLNDPLKYLSNWNPSATFCKWQGITCTNSSRITVIELSGKNISGKISSSIFQLPY IQTIDLSSNQLSGKLPDDIFSSSSLRFLNLSNNNFTGPIPNGSIFLLETLDLSNNMLSGKIPQEIGSFSSLKFLDLGGNVLVGKIPLSVTNLTSLEVLTL ASNQLVGQIPSELGQMRSLKWIYLGYNNLSGEIPIELGQLTSLNHLDLVYNNLTGQIPSSLGNLSNLQYLFLYQNMLAGPIPKSIFGLTKLISLDLSDNS LSGEIPELIIKLKNLEILHLFSNNFTGKIPVALSSLPRLQILQLWSNKLSGEIPKDLGKRNNLTVLDLSSNSLTGRIPEGLCSSGNLFKLILFSNSLEDE IPKSLSTCNSLRRVRLQDNSLSGELSSEFTKLPLVYFLDISSNNLSGRIDSRKWEMPSLQMLSLARNSFLGGLPDSFGSENLENLDLSQNLFSGAIPRKF GSLSEIMQLRLSKNKISGEIPDELSSCEKLVSLDLSHNKLSGQIPASFSEMPVLGLLDLSHNELSGKIPANLGRVESLVQVNISHNHFHGSLPSTGAFLA INASAIAGNDLCGGDKTSGLPPCRRVKSPMWWFYVACSLGALVLLALVAFGFVFIRGQRNLELKRVENEDGTWELQFFNSKVSKSIAIDDILLSMKEENL ISRGKKGASYKGKSITNDMEFIVKKMNDVNSIPLSEISELGKLQHPNIVNLFGLCQSNKVAYVIYEYIEGKSLSEVLLNLSWERRRKIAIGIAKALRFLH CYCSPSVLAGYMSPEKIIIDGKDEPRLILSLPSLLCIETTKCFISSAYVAPETRETKDITEKSDMYGFGLILIELLTGKGPADAEFGGHESIVEWARYCY SDCHLDMWIDPMISGNASINQNELIETMNLALQCTATEPTARPCANEVSKTLESALRKSSCVLGLKFSSLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	0	1
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	2.00	0.7164	TIP4.1
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	2.23	0.7321
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	5.09	0.7232	SMO1.2
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.003G064600 [exp]	11.95	0.6653
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.013G152400 [exp]	14.96	0.6651	Pt-XTH9.2
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	15.68	0.7007
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	15.81	0.6751
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	16.73	0.6560
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	18.57	0.6651
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.014G012300 [exp]	19.07	0.6975

Compare expression of checked genes

Potri.006G237400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.