Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HB1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32880 1413 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT1G52150 1399 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT2G34710 1093 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1065 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1065 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT4G00730 90 / 4e-18 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 86 / 6e-17 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 85 / 1e-16 HD PDF2 protodermal factor 2 (.1) AT4G17710 77 / 4e-14 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G21750 71 / 2e-12 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G045100 [exp] 1641 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.001G188800 [exp] 1493 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1473 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.001G372300 [exp] 1174 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1163 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1103 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 1066 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G074800 [exp] 83 / 3e-16 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.002G154700 [exp] 81 / 3e-15 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037568 [exp] 1401 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011616 [exp] 1384 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10011426 [exp] 1317 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 1161 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10000719 [exp] 1107 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1102 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1097 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1094 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10020059 [exp] 103 / 2e-22 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031892 [exp] 93 / 3e-19 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0183 [poplar] [flax] PAS_Fold PF08670 [poplar] [flax] MEKHLA MEKHLA domain
Representative CDS sequence Show only first row Show all	>Potri.006G237500.3 pacid=42768996 polypeptide=Potri.006G237500.3.p locus=Potri.006G237500 ID=Potri.006G237500.3.v4.1 annot-version=v4.1 ATGATGGCTGTAAGCTCGACGTGTAAGGATGGGAGTACTAAGATAACAATGGACAATGGAAAGTACGTAAGGTACACACCAGAACAAGTGGAAGCACTAG AAAGGCTTTACCATGAATGTCCTAAGCCAAGCTCTATGCGTCGCCAACAGTTGATTAGGGAATGCCCTATTCTATCTCACATCGAGCCTAAACAAATCAA AGTTTGGTTCCAAAATCGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCATCGCGGCTTCAAGCTGTGAATAGGAAATTAACAGCAATGAATAAGCTGTTA ATGGAGGAGAATGATAGGCTGCAAAAGCAGGTGTCACAGCTGGTATATGAGAATAGTTACTTCCGCCAACAGACACAAAATGCTACAAACCTTGCCACCA CAGACACAAGTTGTGAATCAGTGGTGACCAGTGGTCAGCACCATTTGACTCCGCAGCATCCACCAAGGGATGCCAGCCCTGCAGGACTTTTGTCCATTGC AGAGGAGACTTTAGCACAGTTTCTTTCGAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATC GTTGCTATTTCTCATGGATGCACTGGTGTGGCAGCACGTGCATGTGGCCTTGTGGGTCTAGAACCTACGAGAGTTGCCGAAATCCTTAAAGATCGGCCAT CATGGTTTCGTGATTGCCGAGCTGTGGATGTTGTCAATGCATTGTCCACCGGAAGCGGTGGAACTATTGAATTGCTTTATATGCAGCTCTATGCGCCTAC AACTTTGGCACCAGCTCGTGACTTCTGGTTACTGCGCTACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAGAGATCTCTTAACAACACCCAA AATGGTCCAAGCATGCCACCTACACAGCATTTTGTGAGAGCAGAAATGCTGCCTAGCGGGTATCTTATTAGACCTTGTGAAGGAGGTGGATCAATTATTC ATGTAGTTGATCATATGGATTTAGAGCCTTGGAGTGTACCTGAAGTGTTGCGCCCGCTTTACGAGTCATCAACGTTGCTTGCTCAGAAGACAACAATGGC GGCTTTACGCCATTTGAGGCAGGTTTCTCAAGAAGTTTCTCAGCCAAACGTCACTGGTTGGGGAAGAAGACCTGCAGCTTTGCGTGCATTAAGTCAGAGA CTGAGCAAGGGCTTCAATGAAGCTGTTAATGGATTTGCTGATGAGGGATGGTCTATGTTGGAAAGTGATGGCATTGATGATGTAACAGTTCTTGTAAACT CATCTCCTGCCAAAATGATGGGTGTAAATTTTTCTTATGCCAATGGATTTCCATCTATGAGTAATGCAGTGCTTTGTGCGAAAGCATCCATGTTGTTACA GAATGTACCTCCAGCAATACTTCTCAGATTCTTGCGTGAACATCGATCAGAATGGGCAGACAGTGGTATTGATGCTTATGCAGCTGCTGCTGTTAAAGCT GGTCCTTGTAGCTTGCCAATGTCTCGAGCTGGAAATTTTGGGGGTCAAGTTATCCTCCCTTTGGCTCACACAATTGAGCATGAAGAGTTTATGGAGGTCA TTAAGCTTGAAAATATGGGCTATCGGGAGGACATGCTCATGCCCGGTGATGTTTTCCTGTTACAACTCTGTAGTGGAGTAGACGAGAATGCTGTTGGCAC CTGTGCTGAACTCATCTTTGCCCCAATTGATGCCTCTTTTTCTGATGATGCTCCTATTATTCCTTCTGGTTTCCGTATCATTCCTCTTGATTCTGGGATG GATGCCTCCAGTCCAAACCGCACACTTGACCTTGCATCTGCTCTTGAGGTTGGGCCTGCTGGAAATAGAGCATCAGGTGATCTTTCAGGCCGTAGTGGGT GCACAAAGTCAGTGATGACAATAGCATTCCAATTTGCATTTGAGATGCACCTTCAAGAAAATGTGGCATCCATGGCTCGGCAGTATGTTCGTAGTATTAT AGCTTCTGTTCAGCGGGTAGCATTAGCACTCTCCCCTTCTCATTTTGGTTCTCATGCTGGTTTTCGGCCACCACCCGGTACTCCTGAAGCGCACACACTA GCTCGTTGGATCTGTGAAAGCTACAGGTGCTATCTAGGTGTGGAACTGCTCAAAAATGAAGGAAGTGAATCTATTCTTAAAACACTCTGGCATCACTCAG ATGCACTTATGTGCTGCTCTTTGAAGACTCTGCCGGTTTTTACATTTGCAAATCAAGCAGGACTTGACATGCTTGAGACAACTTTGGTTGCACTTCAAGA CATCACTTTGGAAAAGATATTTGATGATAATGGAAGGAAAACATTGTACTCAGAGTTCCCACAAATAATGCAGCAGGGTTTTATGTGCCTTCAAGGTGGT ATCTGCCTGTCAAGTATGGGAAGGCCCGTCTCCTATGAAAGAGCTGTGGCATGGAAGGTATTGAATGAAGAAGAGAGCGCTCACTGCATTTGCTTCATGT TCATCAACTGGTCTTTTGTGTGA
AA sequence Show only first row Show all	>Potri.006G237500.3 pacid=42768996 polypeptide=Potri.006G237500.3.p locus=Potri.006G237500 ID=Potri.006G237500.3.v4.1 annot-version=v4.1 MMAVSSTCKDGSTKITMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLL MEENDRLQKQVSQLVYENSYFRQQTQNATNLATTDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLAQFLSKATGTAVEWVQMPGMKPGPDSIGI VAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVVNALSTGSGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQ NGPSMPPTQHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQVSQEVSQPNVTGWGRRPAALRALSQR LSKGFNEAVNGFADEGWSMLESDGIDDVTVLVNSSPAKMMGVNFSYANGFPSMSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADSGIDAYAAAAVKA GPCSLPMSRAGNFGGQVILPLAHTIEHEEFMEVIKLENMGYREDMLMPGDVFLLQLCSGVDENAVGTCAELIFAPIDASFSDDAPIIPSGFRIIPLDSGM DASSPNRTLDLASALEVGPAGNRASGDLSGRSGCTKSVMTIAFQFAFEMHLQENVASMARQYVRSIIASVQRVALALSPSHFGSHAGFRPPPGTPEAHTL ARWICESYRCYLGVELLKNEGSESILKTLWHHSDALMCCSLKTLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGG ICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	0	1	Pt-HB1.6
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	1.00	0.9062	PHB.2
AT1G58350		ZW18	Putative serine esterase fami...		Potri.013G104400 [exp]	6.08	0.8298	Pt-ZW18.2
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	8.12	0.8709
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	12.00	0.8027
AT3G53540			unknown protein		Potri.006G213700 [exp]	12.12	0.8528
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	12.32	0.8617
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	14.96	0.8738
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	18.70	0.8612	Pt-VPS33.2
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	20.49	0.8428
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	23.66	0.8410

Compare expression of checked genes

Potri.006G237500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.