Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32900 238 / 1e-80 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2) AT5G16870 119 / 3e-34 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) AT3G03010 118 / 9e-34 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G050100 [exp] 124 / 6e-36 AT5G16870 259 / 2e-89 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) Potri.013G082850 [exp] 47 / 8e-08 AT3G03010 100 / 8e-29 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009246 [exp] 114 / 6e-32 AT5G16870 259 / 8e-90 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) Lus10011608 [exp] 91 / 2e-24 AT4G32900 89 / 5e-24 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2) Lus10002035 [exp] 39 / 0.0004 AT5G11630 80 / 3e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0305 [poplar] [flax] PTH2 PF01981 [poplar] [flax] PTH2 Peptidyl-tRNA hydrolase PTH2
Representative CDS sequence Show only first row Show all	>Potri.006G237900.4 pacid=42770542 polypeptide=Potri.006G237900.4.p locus=Potri.006G237900 ID=Potri.006G237900.4.v4.1 annot-version=v4.1 ATGTGGGGTGTGTCGAAAAACCCATCTCAGCTTTCAAACAAGAAGCAGGAAAAAGGAGGTTTAGCAGAGAGTTTTAGGCCAGAAAACTTCATTCCGGGCC TTATCATTGGTTTCATTTTTGGCTTGTTTTTGGATTTGTCGAACCCTTCAAAAAATCAAACCAAGAAGAAGAATTTTTTGCCTGGAAAGTCCCAGCAGCA AAGTCTGGAAGATGGTGACAAAGAGCTTAAAATGGTTTTTGTAGTCAGACAAGACCTGAAGATGGGTGCTGGAAAAATTGCATCTCAGTGTGCACATGCA GCCACTGGCATGTATGCAGAGCTGATTTATAGCCACCGGATTCTCTTGAGACAATGGGAGCAATCTGGACAGCCCAAAATAGTTGTTACATGCAAGAATC AACAAGAAATGAACAAGATAAGAGAAGCAGCTGAGAACATTGGCCTTCCAACTTTTGCTGTTGCTGATGCTGGAAGAACACAGGTTTCAGCTGGGTCGAA GACTGTTCTTGCTGTTGGACCTGGGCCAAAAGAATCAGTTGATTCAGTTACAGGAAAACTGCGGCTCCTCTAA
AA sequence Show only first row Show all	>Potri.006G237900.4 pacid=42770542 polypeptide=Potri.006G237900.4.p locus=Potri.006G237900 ID=Potri.006G237900.4.v4.1 annot-version=v4.1 MWGVSKNPSQLSNKKQEKGGLAESFRPENFIPGLIIGFIFGLFLDLSNPSKNQTKKKNFLPGKSQQQSLEDGDKELKMVFVVRQDLKMGAGKIASQCAHA ATGMYAELIYSHRILLRQWEQSGQPKIVVTCKNQQEMNKIREAAENIGLPTFAVADAGRTQVSAGSKTVLAVGPGPKESVDSVTGKLRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32900			Peptidyl-tRNA hydrolase II (PT...		Potri.006G237900 [exp]	0	1
AT4G21580			oxidoreductase, zinc-binding d...		Potri.004G036100 [exp]	14.07	0.7447
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	26.15	0.7349
AT4G19140			unknown protein		Potri.003G103000 [exp]	29.83	0.6145
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	39.24	0.7128
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	43.45	0.7119
AT3G04890			Uncharacterized conserved prot...		Potri.013G037050 [exp]	50.05	0.6983
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	54.89	0.7068
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	62.60	0.6367
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	68.70	0.6594
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	68.86	0.6650

Compare expression of checked genes

Potri.006G237900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.