Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11620 184 / 8e-58 SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related (.1) AT5G66070 43 / 9e-05 RING/U-box superfamily protein (.1.2) AT1G72310 43 / 0.0001 ATL3 RING/U-box superfamily protein (.1) AT5G53110 42 / 0.0002 RING/U-box superfamily protein (.1) AT3G60966 40 / 0.0003 RING/U-box superfamily protein (.1) AT1G22500 41 / 0.0005 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT5G17600 41 / 0.0005 RING/U-box superfamily protein (.1) AT5G47610 40 / 0.0006 RING/U-box superfamily protein (.1) AT5G41450 40 / 0.0006 RING/U-box superfamily protein (.1) AT5G10380 40 / 0.0006 ATRING1, RING1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139400 [exp] 45 / 1e-05 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.017G102800 [exp] 45 / 2e-05 AT3G13430 69 / 9e-14 RING/U-box superfamily protein (.1.2.3) Potri.005G113200 [exp] 43 / 5e-05 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.001G400600 [exp] 42 / 7e-05 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.003G184800 [exp] 42 / 9e-05 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.007G057300 [exp] 41 / 0.0002 AT2G17450 66 / 1e-13 RING-H2 finger A3A (.1) Potri.007G086300 [exp] 41 / 0.0002 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G097500 [exp] 42 / 0.0003 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 42 / 0.0003 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036466 [exp] 45 / 4e-05 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10011702 [exp] 44 / 6e-05 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10022743 [exp] 43 / 6e-05 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10041134 [exp] 43 / 0.0001 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10032382 [exp] 43 / 0.0001 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10008972 [exp] 42 / 0.0002 AT5G06490 76 / 2e-17 RING/U-box superfamily protein (.1) Lus10012745 [exp] 42 / 0.0003 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10009511 [exp] 42 / 0.0003 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10017510 [exp] 41 / 0.0003 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10023086 [exp] 41 / 0.0007 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G238000.1 pacid=42767266 polypeptide=Potri.006G238000.1.p locus=Potri.006G238000 ID=Potri.006G238000.1.v4.1 annot-version=v4.1 ATGGAATCTGTTGGCTCTGATAGTTCATCTACATCCTCACCTGACTCCAACTACCGCCACCGCAACCGTCTTCATCTACGGCTTAAACCAAGCCAACCGG TGGCAGACCGCATTGTTCGAGCCATCCGTCACCGTCTTCGCCTTCTCCATCGATCAGAAGCCAACTTTTTTATCTTGGGTGCCACAGGGAATGTCTACAC CGTGACCTTAAGTGCTACCCCTACGTGCTCATGCCCTGATCGTACAACACCATGCAAGCATATATTATTTGTTTTGATTCGTGTATTGGGCGTCTCTCTT GATGATGCATGTCTTCGAAGGAGGAATCTTAGGACTTGCCAGCTTAATCACCTGCTTGGGACTCCTACCTTGCCAGAGGCGCTGGCCGGGTTTAGCGTTC GTGAGAGATTCCATCAGTTGTTCTTTCAGACAAGGCATGGTGTTTTGAGACCTCGTGTTGAGGTTGAAGACGGGACAAAGTGTCCGATTTGTCTTGAAGA GATGGAGAAGGGAGAGAAGCTGGCGGCTTGTGGAACATGCAGGAATGTTATTCATGCAGAATGCTTGATGAAGTGGAAGAGGAGTAAGGGGAGGAGGGCA GCTAGCTGTGTGATTTGTCGAGCAAGGTGGAGAGACAGAAATGATGAAGAAAGGTATCTGAATTTGGCAGCTTATGTTGGGGAGGATGATATGGCTGAAG ATGGTGTAGGTATTTGTGTCGGCTAA
AA sequence Show only first row Show all	>Potri.006G238000.1 pacid=42767266 polypeptide=Potri.006G238000.1.p locus=Potri.006G238000 ID=Potri.006G238000.1.v4.1 annot-version=v4.1 MESVGSDSSSTSSPDSNYRHRNRLHLRLKPSQPVADRIVRAIRHRLRLLHRSEANFFILGATGNVYTVTLSATPTCSCPDRTTPCKHILFVLIRVLGVSL DDACLRRRNLRTCQLNHLLGTPTLPEALAGFSVRERFHQLFFQTRHGVLRPRVEVEDGTKCPICLEEMEKGEKLAACGTCRNVIHAECLMKWKRSKGRRA ASCVICRARWRDRNDEERYLNLAAYVGEDDMAEDGVGICVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	0	1
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	1.00	0.9745
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	1.41	0.9709
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.004G081000 [exp]	1.73	0.9630
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	2.82	0.9629
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	6.92	0.9440
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	6.92	0.9309
AT5G42570			B-cell receptor-associated 31-...		Potri.011G089100 [exp]	7.07	0.9451
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	8.12	0.9323
AT5G06850			C2 calcium/lipid-binding plant...		Potri.009G065600 [exp]	10.39	0.9200
AT4G39810			Polynucleotidyl transferase, r...		Potri.005G079100 [exp]	12.04	0.9065

Compare expression of checked genes

Potri.006G238000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.