Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 1446 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 1095 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 701 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 679 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 404 / 5e-124 Protein of unknown function (DUF810) (.1) AT4G11670 251 / 4e-69 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G044200 [exp] 1678 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 1186 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 688 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 686 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 391 / 5e-119 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 314 / 1e-90 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034947 [exp] 1140 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 924 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 815 / 0 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 656 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 630 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 554 / 0 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 542 / 0 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 538 / 0 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 425 / 6e-139 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10026160 [exp] 414 / 3e-127 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.006G238200.1 pacid=42768716 polypeptide=Potri.006G238200.1.p locus=Potri.006G238200 ID=Potri.006G238200.1.v4.1 annot-version=v4.1 ATGGCTTCTCTCTTTAGAGACCTCTCATTAGGCCACTCGAAGAGAGAGTCACCACCGCTAAAACCACCGCTAAAACTACAGCAATTATCCATAATGCCCT CTAAACCAACTATCACCACCACTGATCTCGACTCGCCACTGGGTCAACTCGACACACAACTCACCGATCCCGACCTCCGATCCACCGCTTACGAGATCTT CGTCGCCGCTTGCCGTACTTCCTCGGGAAAGCCCTTAACCTACACCCCCAACCCGTCCAATTCTGACTCAACCACGAACCACTCGAACCACTCCCCTAAC TCGCCTGCTTTACAACGCTCACTCACCTCTGCTGCTGCTAGCAAGATGAAGAAAGCTTTAGGGCTGAAGTCTCCTGGTTCGGGCTCTAAGAAGAGTCCCG GGTCGGGTTCGAGTTCTGGGTCGGGTCAGGGGAAGGCGAGGAGAGCTTTGACTGTTGGTGAGTTGATGCGGGCTCAAATGCGGGTCAGTGAGACTGTGGA TTCTAGGATTAGAAGGGCTTTACTGAGGATTGCTGCTGGTCAGGTTGGAAGGCGAATTGAGTCAGTTGTTCTTCCGCTGGAGCTACTGCAGCAGCTCAAG CTTTCGGATTTTACTGATCAACAAGAATATGAAGTGTGGCAGAAGAGAACCATGAAAGTTCTTGAGGCTGGACTACTTCTGCATCCTCATGTGCCACTTG ATAAGTCAAATCCTACTTCACAGCGGCTGCGGCAAATTATTCAAGGAGCTATGGATAGGCCTATAGAGACTGGAAAGAACAATGAGTCTATGCAAGTGCT TCGCAGTGCTGTTATGTCCTTAGCTAGTAGATCTGACGGGTCACTCTCAGAGATATGCCACTGGGCTGATGGGATTCCATTGAACCTTCGACTCTATGAA ATGCTTTTACAAGCCTGCTTTGATGTTAATGATGAAACATCTGTAATTGATGAAATTGATGAACTTATGGAACACATAAAGAAGACTTGGACAATCCTTG GAATGAATCAAATGCTCCACAATCTTTGCTTCACATGGGTTTTATTTCACCGCTTTGTTGCAACTGGTCAAGCAGAAACGGATCTGCTGGATGCAGCTGA TGGTCAGCTAGCAGAAGTTGCGAGAGATGCAAAGACAACGAAGGATCCACAATACTCCAAGATTTTGAGTTCTACATTGAGTTCAATTTTGGGATGGGCT GAGAAAAGGCTTCTTGCATATCACGACACTTTTGACAGCGGGAATGTTGAGACCATGCAGGGAATTGTTTCTCTGGGGGTGTCGGCAGCCAAGATCTTGG TTGAGGATATATCTAATGAGTATCGCAGAAAGAGAAAAGGTGAAGTGGATGTGGTTCGTGCCAGGATTGACACATATATCAGATCCTCACTGCGCACTGC TTTTGCTCAAAGAATGGAGAAAGCAGACTCAAGCCGGAGAGCATCCAAAAACCAGCCAAATCCTCTTCCTGTTCTTGCCATCCTTGCAAAGGATGTTGGT GAGTTGGCAGTTAACGAGAAGCAAGTATTTAGTCCGATACTGAAAAGATGGCATCCTTTCTCAGCTGGTGTTGCTGTGGCCACGCTTCATGCTTGCTATG GAAATGAGATAAAACAATTCATATCTGGTATAACAGAATTAACACCAGATGCCGTACAAGTGCTTAGAGCTGCAGATAAGCTGGAGAAAGATCTTGTGCA GATTGCTGTAGAAGATTCAGTGGACAGCGATGATGGTGGGAAGGCAATAATCCGTGAAATGCCTCCTTATGAAGCTGAAGCTGCAATTGCTGATCTGGTA AAAGCATGGATCAAAGCAAGACTAGACAGGCTCAAGGAATGGGTCGACAGGAATTTGCAACAAGAGGTCTGGAATCCGCAGGCAAATCAAGAAGGATATG CTCCCTCTGCTGTTGAAGTTTTGCGGATTATTGATGAAACTTTGGATGCATATTTTCAGCTGCCAATACCAATGCATCCCGTGCTGCTACCTGATTTGAT GACTGGCCTTGACAGATGTCTTCAGTATTATGCAACTAAGGCAAAATCTGGCTGCGGATCACGGAATACATATGTTCCAACTATGCCAGCATTGACCAGA TGTACTATGGAATCAAAGTTTGCATGGAAGAAGAAAGAGAAGTCAGCAAACACTCAAAAGAGGAATTCTCAGGTTGCAACAATGAATGGGGACAATTCTT TTGGAGTTCCTCAGTTATGTGTTCGTATAAATACTTTGCACAGAATCCGATCAGAGTTGGATGTTTTAGAGAAGAGAATAATAACCCATTTGAGGAACTC AGAATCTGCACACGCAGAAGACTTTTCAAATGGTTTGGCAAAGAAGTTTGAATTGACACCAGCTGCTTGTATAGAAGGAGTTCAAGCACTCAGCGAGGCA GTTGCTTACAAACTCGTTTTCCATGACTTGAGTCATGTTTTCTGGGATGGTTTGTATGTTGGAGAGCCATCATCTTCTAGGATTGAACCTTTTATCCAGG AGGTTGAGCGGAATTTGCTGATCATTTCAAACATTATACATGAAAGAGTTCGTCCACGTGTTGTTACTGACATAATGAGAGCTTCCTTTGATGGATTTTT GCTTGTTCTGCTTGCGGGAGGCCCTTCTCGTGCTTTCATGCGTCAGGACTCTCAGATAATAGAGGATGATTTCAAATCCCTTAAAGATCTATTTTGGGCC AACGGGGATGGCCTGCCTACTGAGTTGATAGATAAGTTTTCAACTACAGTCAGAAGTATCCTTCCCCTTTTCCGAACAGATACAGAGAGTCTCATTGAGC GTTACAGACGCGTGACGTTGGAGACATATGGCTCTTCTGCCAGGTCTAAACTTCCGTTACCTCCAACTTCAGGACAGTGGAATCCTACTGACCCAAACAC ACTTCTTCGTATGTTGTGTTATCGGAACGATGAAGCAGCATCGAGGTATCTTAAGAAGACTTACAATTTGCCCAAGAAACTGTAA
AA sequence Show only first row Show all	>Potri.006G238200.1 pacid=42768716 polypeptide=Potri.006G238200.1.p locus=Potri.006G238200 ID=Potri.006G238200.1.v4.1 annot-version=v4.1 MASLFRDLSLGHSKRESPPLKPPLKLQQLSIMPSKPTITTTDLDSPLGQLDTQLTDPDLRSTAYEIFVAACRTSSGKPLTYTPNPSNSDSTTNHSNHSPN SPALQRSLTSAAASKMKKALGLKSPGSGSKKSPGSGSSSGSGQGKARRALTVGELMRAQMRVSETVDSRIRRALLRIAAGQVGRRIESVVLPLELLQQLK LSDFTDQQEYEVWQKRTMKVLEAGLLLHPHVPLDKSNPTSQRLRQIIQGAMDRPIETGKNNESMQVLRSAVMSLASRSDGSLSEICHWADGIPLNLRLYE MLLQACFDVNDETSVIDEIDELMEHIKKTWTILGMNQMLHNLCFTWVLFHRFVATGQAETDLLDAADGQLAEVARDAKTTKDPQYSKILSSTLSSILGWA EKRLLAYHDTFDSGNVETMQGIVSLGVSAAKILVEDISNEYRRKRKGEVDVVRARIDTYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVG ELAVNEKQVFSPILKRWHPFSAGVAVATLHACYGNEIKQFISGITELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEAAIADLV KAWIKARLDRLKEWVDRNLQQEVWNPQANQEGYAPSAVEVLRIIDETLDAYFQLPIPMHPVLLPDLMTGLDRCLQYYATKAKSGCGSRNTYVPTMPALTR CTMESKFAWKKKEKSANTQKRNSQVATMNGDNSFGVPQLCVRINTLHRIRSELDVLEKRIITHLRNSESAHAEDFSNGLAKKFELTPAACIEGVQALSEA VAYKLVFHDLSHVFWDGLYVGEPSSSRIEPFIQEVERNLLIISNIIHERVRPRVVTDIMRASFDGFLLVLLAGGPSRAFMRQDSQIIEDDFKSLKDLFWA NGDGLPTELIDKFSTTVRSILPLFRTDTESLIERYRRVTLETYGSSARSKLPLPPTSGQWNPTDPNTLLRMLCYRNDEAASRYLKKTYNLPKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	0	1
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	4.24	0.8962
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.018G081300 [exp]	4.58	0.8736
AT3G15940			UDP-Glycosyltransferase superf...		Potri.001G179000 [exp]	5.65	0.8548
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	5.91	0.8977
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	6.48	0.8462
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	6.48	0.8761
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	9.21	0.8500
AT2G16400	HD	BLH7	BEL1-like homeodomain 7 (.1)		Potri.002G031000 [exp]	14.38	0.8783
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	15.87	0.8779
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	17.46	0.8764	Pt-SEC5.2

Compare expression of checked genes

Potri.006G238200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.