Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23340 98 / 2e-22 RNI-like superfamily protein (.1) AT4G15475 66 / 1e-11 F-box/RNI-like superfamily protein (.1) AT1G21410 65 / 2e-11 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 63 / 8e-11 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G27920 62 / 2e-10 F-box family protein (.1) AT3G58530 56 / 2e-08 RNI-like superfamily protein (.1) AT5G51380 55 / 3e-08 RNI-like superfamily protein (.1) AT1G55590 55 / 4e-08 RNI-like superfamily protein (.1) AT5G01720 53 / 3e-07 RNI-like superfamily protein (.1) AT5G25350 49 / 5e-06 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088800 [exp] 97 / 3e-22 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 74 / 2e-14 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 74 / 5e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 67 / 5e-12 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 67 / 8e-12 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.011G169800 [exp] 62 / 3e-10 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 59 / 1e-09 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 59 / 2e-09 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.002G074700 [exp] 57 / 5e-09 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011626 [exp] 427 / 9e-150 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10013444 [exp] 100 / 3e-23 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 99 / 6e-23 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 72 / 1e-13 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012294 [exp] 64 / 5e-11 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10012764 [exp] 64 / 7e-11 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10028645 [exp] 62 / 2e-10 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10027217 [exp] 62 / 3e-10 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10038927 [exp] 62 / 4e-10 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10018942 [exp] 61 / 4e-10 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G238300.1 pacid=42767331 polypeptide=Potri.006G238300.1.p locus=Potri.006G238300 ID=Potri.006G238300.1.v4.1 annot-version=v4.1 ATGTCAAAACTAGGTGATGATGAGTTAGCCTTAATTATCAACTGGGTTATTGATCAGAATGACAGACAATCATTCTCTCTAGTATGCAAGCAATGGCTTA ATGTAGAAGGCCAAACCCGTTTATCAATTCGCGTTTTTGAACCCGAACTACTCCATAAATTCTTGCCCAGATTCCCAAATTTGTTAACTTTTGAGTCTTC AAAACGAATCACCAACAACCACCTTGAATTCATAGCCAATACATGTCCTAAACTTGAGTTTCTCAATCTCAAGCAACAATCAATTGAAAGCCAAAAACTT GACGGGTTTGATGACTTATTAGATTTTGATGATGTTGGTGTTTTAGCTATTGCGAATGGCTGTTGCAAATTGTGTAAAGTATTGTTTAGAAGGAGAGGGA GGGTTGGGAATGTTGGGGTTATTAGTCTTGTCAAGTGTGCACAAAGTTTGAGTGTTTTAGATTTGGGGTGGTGTAGCTTGATAAACGATTCATCACTTGA AGCAATTGGGTGTATGAATTCGATTCGGGCTTTGAATTTAGAAGGTTGTTCTTTGGTTACTGATAAAGGTTTGACCTTTTTGGCAACCGGGTCTTCTTCA AGGACATTAAAGAGGTTGGTTCTTGCAGAATGTGATAGACTTACTGATTTCGGGGTGTCATTGTTGCAGGGAATGTGTTGTTTGGAGGAGTTGAATTTGG CTGAATGTGGGCCAAAAGTGACGGATAATGGAGGTATGGCAGTTGCCTCGATTGCTAGTCTTAAAAGAATGAATCTTTCATGGTTGATCAATGTGTCAGA TATTACACTTGTTGCAATAGCTGGGAATTGTAGGAATTTGGTAGCTCTTGATTTAACTGGGTGTGAGATGATTACTGGAACTGGCATTCGTGCCCTTGGT TATCATGAGTGTTTGGAATCATTAGTGTTGGCTTCCTGTTACAACATTTGTGGGGATGACGTGGATATGGTTTTGAAATGCAAGTCATTGAGGTCTATTG TGCTTGATAAAGGATTGAAGATGTGGATACCAATGAGGATGCAGGAAAACATTAGCAGGTTTTGTCAGTTGCATTGGAGATAA
AA sequence Show only first row Show all	>Potri.006G238300.1 pacid=42767331 polypeptide=Potri.006G238300.1.p locus=Potri.006G238300 ID=Potri.006G238300.1.v4.1 annot-version=v4.1 MSKLGDDELALIINWVIDQNDRQSFSLVCKQWLNVEGQTRLSIRVFEPELLHKFLPRFPNLLTFESSKRITNNHLEFIANTCPKLEFLNLKQQSIESQKL DGFDDLLDFDDVGVLAIANGCCKLCKVLFRRRGRVGNVGVISLVKCAQSLSVLDLGWCSLINDSSLEAIGCMNSIRALNLEGCSLVTDKGLTFLATGSSS RTLKRLVLAECDRLTDFGVSLLQGMCCLEELNLAECGPKVTDNGGMAVASIASLKRMNLSWLINVSDITLVAIAGNCRNLVALDLTGCEMITGTGIRALG YHECLESLVLASCYNICGDDVDMVLKCKSLRSIVLDKGLKMWIPMRMQENISRFCQLHWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23340			RNI-like superfamily protein (...		Potri.006G238300 [exp]	0	1
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	6.16	0.7649
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Potri.013G077700 [exp]	17.08	0.7497
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	18.57	0.7211
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.010G113900 [exp]	27.42	0.6991
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.017G125000 [exp]	27.92	0.7037
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	30.39	0.6697
AT4G16460			unknown protein		Potri.006G016100 [exp]	38.49	0.6566
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.015G129200 [exp]	43.70	0.6907	Pt-IRE.2
AT1G76270			O-fucosyltransferase family pr...		Potri.002G011100 [exp]	53.80	0.5990
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	59.96	0.6608

Compare expression of checked genes

Potri.006G238300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.