Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25830 410 / 4e-144 YebC-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038722 [exp] 426 / 5e-150 AT2G25830 412 / 1e-144 YebC-related (.1) Lus10011628 [exp] 307 / 2e-104 AT2G25830 321 / 5e-110 YebC-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01709 [poplar] [flax] Transcrip_reg Transcriptional regulator
Representative CDS sequence Show only first row Show all	>Potri.006G238400.1 pacid=42768626 polypeptide=Potri.006G238400.1.p locus=Potri.006G238400 ID=Potri.006G238400.1.v4.1 annot-version=v4.1 ATGAGAGGAGTAGGTGCGATTCTCCACAGGTTCTCAAATGGGATCTCTTTAAAATGCCCAACACATTCACTTTCAATTCAAAGGAGTGTTTTTCTTGGAA GCATGGATGCATTATTATCATCAAATAGTAGCAATTCCTCTAGTTTGTTATTGCTATATGAAGAGAAACACAGGGATAGTAGTGGCTATCAAGTCAAGAA TGTTAGAAAGATATGGACTTTCCCTCCTGTTTGTATGGGCAGGCGTTCTTGTAAAATTGCTGGCAGAAAGGGAGCTCAAGATGCAAAGAAGGCAAAATTG TATTGTAGGATTGGGAAGGAAGTTGTATCTGCTGTAAAGAAAGGCGGTCCAAATCCAGAATCAAATACAGCTCTGGCTGCTTTAATTGATAAATTCAAGG AGCTTGATGTACCCAAGGAAATTTTGGAGCGCAATATCAAGAGGGCTTCTGAGAAGGGACAAGAGGCTTTCATTGAGAAAATTTATGAGGTATATGGTCT CGGTGGAGTTAGTATTGTAGTGGAGGTCTCGACAGATAAAATAAAAAGATCCGTGGCAGTTATCAGAGAGGTGGTCAAGGACTATGGAGGAAAGATGGCA GATCCAGGATCTGTATTGTTCAAGTTTAGACGTGCCAGGGTTGTGAATATTAAAGTCACAGATGCTGATAGAGATCAGCTCCTTGGCATTGCATTAGATG CTGGTGCTGAGGATGTTATTGAACCTCCAACATATGAAGATGATTCTGATGAGGATAGGTCAGAAAGCTACTATAAAGTTGTCAGTCCAGCAGAGAACTA TGCAGCAATATTGTCAAAATTACGCAATGAAGGAATAAGTTTTGAGACTGATAATGGCTCTGAGCTACTTCCCATAACACCTATTGAGGTAGATGATGAG GCAGTAGAGTTGAACAAAGTACTCATGTCTAAATTACTTGAACTTGATGATGTCGATGCTGTTTACACGGACCAGAAGTAA
AA sequence Show only first row Show all	>Potri.006G238400.1 pacid=42768626 polypeptide=Potri.006G238400.1.p locus=Potri.006G238400 ID=Potri.006G238400.1.v4.1 annot-version=v4.1 MRGVGAILHRFSNGISLKCPTHSLSIQRSVFLGSMDALLSSNSSNSSSLLLLYEEKHRDSSGYQVKNVRKIWTFPPVCMGRRSCKIAGRKGAQDAKKAKL YCRIGKEVVSAVKKGGPNPESNTALAALIDKFKELDVPKEILERNIKRASEKGQEAFIEKIYEVYGLGGVSIVVEVSTDKIKRSVAVIREVVKDYGGKMA DPGSVLFKFRRARVVNIKVTDADRDQLLGIALDAGAEDVIEPPTYEDDSDEDRSESYYKVVSPAENYAAILSKLRNEGISFETDNGSELLPITPIEVDDE AVELNKVLMSKLLELDDVDAVYTDQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25830			YebC-related (.1)		Potri.006G238400 [exp]	0	1
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.007G071700 [exp]	3.16	0.9007
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G138500 [exp]	3.46	0.9129
AT2G39440			unknown protein		Potri.012G120220 [exp]	8.94	0.8798
AT2G42080			Chaperone DnaJ-domain superfam...		Potri.016G045401 [exp]	11.87	0.8821
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	13.78	0.8310
AT5G53920			ribosomal protein L11 methyltr...		Potri.011G116100 [exp]	16.43	0.8325
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	17.49	0.8753
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Potri.002G164800 [exp]	21.07	0.8358
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	24.55	0.8379
AT5G53070			Ribosomal protein L9/RNase H1 ...		Potri.012G121228 [exp]	30.39	0.8630

Compare expression of checked genes

Potri.006G238400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.