Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32810 761 / 0 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT1G30100 103 / 3e-23 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G19170 97 / 6e-21 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G24220 96 / 1e-20 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT3G63520 91 / 4e-19 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G14440 87 / 5e-18 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 85 / 5e-17 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G18350 74 / 1e-13 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G044100 [exp] 1091 / 0 AT4G32810 761 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Potri.011G084100 [exp] 100 / 4e-22 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.009G152200 [exp] 97 / 6e-21 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 96 / 1e-20 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 94 / 4e-20 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 91 / 5e-19 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.003G176300 [exp] 88 / 5e-18 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.011G112400 [exp] 87 / 7e-18 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 87 / 1e-17 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038721 [exp] 865 / 0 AT4G32810 689 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10001599 [exp] 860 / 0 AT4G32810 687 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10035696 [exp] 96 / 1e-20 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 89 / 4e-18 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 88 / 7e-18 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 87 / 1e-17 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 82 / 5e-16 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 76 / 2e-14 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10011750 [exp] 66 / 3e-11 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10037286 [exp] 59 / 8e-10 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.006G238500.1 pacid=42770132 polypeptide=Potri.006G238500.1.p locus=Potri.006G238500 ID=Potri.006G238500.1.v4.1 annot-version=v4.1 ATGGCTTCCTTGGCATTTTCCGCTAGTATTGGTCGCTCTATTTCACCATCAAATGCAATGGTTTCTGATAAATTTGAGAGCAGAAGAGAAGGGTTTTCCC TAGGCAAGGGTACTTTTGCAAGAAAACGTGACCCTCGGGACTCAATGGTCCCGAAAGTTGCAACCCAAGCACCAACTGTGTTTCCATCACTGGAGAAGGA ACTTGCTGGTGACCGGAATCATGTTGCATGGACAAGTGTCCAGCAAGAAAGATACGAAGGAGAGCTTGATGTTCAAGGAGAAATTCCACTGTGGTTGAGT GGAACGTATCTTAGAAATGGTCCGGGCATGTGGCACGTAGGGGACTACAACTTCCGGCACCTTTTCGATGGCTATGCCACATTAGTCAGACTCCACTTTG AAAATGGTCGATTAATCGCCGCCCACCGCCAAATCGAATCGGAGGCTTACAAGGCGGCAAAGACGAATAACAAACTATGTTACCGTGAATTTTCTGAGGT CCCAAAGCCTGACAATTTCCTGTCCTACGTAGGGGAACTAGTTAACCTATTCTCCGGAGCGTCATTGACCGATAACGCTAACACTGGCGTGGTCAAGCTC GGTGATGGACGTGTTGTTTGCCTAACTGAAACACAGAAAGGGTCAATAGTTGTTGATCCAAACACCTTGGACACGTTAGGGAAATTTGAATATAGCGATT CACTAGGGGGTCTAATACATTCGGCACATCCAATAGTGACAGACACTGAGTTCTTAACCTTGTTGCCTGATTTGTTCAGGCCCGGATACTTGGTGGTGAG GATGGAGCCTGGAAGTAACGAGAGGAAAGTAATCGGACGGGTGGATTGTCGTGGAGGTCCTGCTCCGGGATGGGTCCACTCGTTTCCGGTTACTGAACAC TATGTGATAGTGCCAGAAATGCCGTTGAGATACTGTGCACAAAATTTGCTAAGAGCTGAGCCCACACCTTTGTACAAGTTTGAGTGGCACCCGGATTCCA AAGGGTTTATGCATGTTATGTGTAAAGCTAGTGGCAAGATTGTGGCAAGTGTGGAAGTGCCTCTATTTGTAACATTCCATTTCATCAATGCTTATGAAGA GAAAGATGAAGATGGGAGGGTGACTGCCGTCATTGCCGATTGTTGTGAGCATAATTCGGACACGACAATCTTAGAGAAGCTAAGTCTACAAAATCTACGG TCTTTCATGGGTGAAGATGTCCTACCAGATGCTAGGGTCGGGAGGTTCATAATTCCTTTGGACGGGAGTCCATATGGGAAATTGGAGGCAGCACTGGACC CAGAAGAGCATGGGAAAGGAATGGACATGTGCAGCATTAACCCTGCATATTTGGGCAAAAAATACAGATATGCTTATGCTTGTGGAGCACAACGCCCTTG TAACTTCCCCAACACCCTCACTAAGATTGACTTGCTCGAGAAGAAGGCAAAGAATTGGTATGAAGAGGGTGCTGTGCCCTCGGAACCATTTTTTGTGGCT CGCCCAGGTGCTACAGAAGAGGATGATGGTGTGGTGATCTCCATGATCAGTGAGAAAAATGGAGATGGATATGCACTGTTATTAGATGGATCAACATTTG AAGAGATTGCAAGAGGAAAGTTCCCTTACGGTCTACCATATGGATTACATGGATGCTGGGTGCCAAAGAAATAA
AA sequence Show only first row Show all	>Potri.006G238500.1 pacid=42770132 polypeptide=Potri.006G238500.1.p locus=Potri.006G238500 ID=Potri.006G238500.1.v4.1 annot-version=v4.1 MASLAFSASIGRSISPSNAMVSDKFESRREGFSLGKGTFARKRDPRDSMVPKVATQAPTVFPSLEKELAGDRNHVAWTSVQQERYEGELDVQGEIPLWLS GTYLRNGPGMWHVGDYNFRHLFDGYATLVRLHFENGRLIAAHRQIESEAYKAAKTNNKLCYREFSEVPKPDNFLSYVGELVNLFSGASLTDNANTGVVKL GDGRVVCLTETQKGSIVVDPNTLDTLGKFEYSDSLGGLIHSAHPIVTDTEFLTLLPDLFRPGYLVVRMEPGSNERKVIGRVDCRGGPAPGWVHSFPVTEH YVIVPEMPLRYCAQNLLRAEPTPLYKFEWHPDSKGFMHVMCKASGKIVASVEVPLFVTFHFINAYEEKDEDGRVTAVIADCCEHNSDTTILEKLSLQNLR SFMGEDVLPDARVGRFIIPLDGSPYGKLEAALDPEEHGKGMDMCSINPAYLGKKYRYAYACGAQRPCNFPNTLTKIDLLEKKAKNWYEEGAVPSEPFFVA RPGATEEDDGVVISMISEKNGDGYALLLDGSTFEEIARGKFPYGLPYGLHGCWVPKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.006G238500 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	1.00	0.9065
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	9.89	0.8728
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	20.34	0.8894
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	21.72	0.8187
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G045900 [exp]	21.77	0.8803
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.006G048800 [exp]	24.65	0.8059
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	32.06	0.8769
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	33.31	0.8741
AT4G08250	GRAS		GRAS family transcription fact...		Potri.002G086100 [exp]	36.05	0.8584
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	37.70	0.7837

Compare expression of checked genes

Potri.006G238500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.