Plant FIBer expression Database

Potri.006G239100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46210 294 / 9e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
AT2G07110 62 / 2e-12 unknown protein
AT3G61620 48 / 9e-07 RRP41 3'-5'-exoribonuclease family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G043600
[exp]
329 / 8e-116 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Potri.014G094300
[exp]
42 / 0.0002 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2)
Potri.019G040100
[exp]
42 / 0.0002 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Potri.013G065700
[exp]
41 / 0.0003 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009221
[exp]
289 / 7e-100 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Lus10037991
[exp]
281 / 3e-96 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Lus10000255
[exp]
43 / 4e-05 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G239100.1 pacid=42769879 polypeptide=Potri.006G239100.1.p locus=Potri.006G239100 ID=Potri.006G239100.1.v4.1 annot-version=v4.1
ATGGAGATTGACAGAGATGATGGTCGTTCACCAAGCCAGTTAAGACCTCTCTCTTGCTCTCACAATGTACTTCACCGTGCCCATGGCTCTGCTAGTTGGT
CTCAAGGAAAACTGGAAAGGGAATATGAGATGATATTGAAGAGGACTTTGCAAAGTATCTGCATTTTGACTCTCAACCCAAACACCACAACATCAATTAT
AGTTCAGTTTGTGAATGATGATGGCGCTCTTCTAGTCTGTGCCATAAATGCAGCATGTGCTGCCCTTGTAGATGCTAGAATTCCTATGAAGCATCTTGCG
GTTGCAATATGTTGTTGTTTGGCTGATGTTGGATATGTTATATTGGATCCTACCAAGTTGGAAGAGCAGAAAATGAAGGGATTTGCATATTTAGTCTTCC
CAAACTCTGTTCTCTCAGTTATACTAGAAGGATCATCACTTGTGGAAGGTGAATCCACGGAACATGGAATCATCACCTCTGTCACCCATGGTGTAATGCC
AGTGGAAGAATATCTCAAATATGTAGAACGAGGGCGTGCAGCCAGTGCAAAATTGTCTGATTTTCTTAGAAAGAGCTTGCAATCACAACTCTCAAGCGAC
TCATCTAAAGCTGCATGA
AA sequence
>Potri.006G239100.1 pacid=42769879 polypeptide=Potri.006G239100.1.p locus=Potri.006G239100 ID=Potri.006G239100.1.v4.1 annot-version=v4.1
MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCAINAACAALVDARIPMKHLA
VAICCCLADVGYVILDPTKLEEQKMKGFAYLVFPNSVLSVILEGSSLVEGESTEHGIITSVTHGVMPVEEYLKYVERGRAASAKLSDFLRKSLQSQLSSD
SSKAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G46210 Ribosomal protein S5 domain 2-... Potri.006G239100
[exp]
0 1
AT5G22040 unknown protein Potri.008G015500
[exp]
1.73 0.8881
AT3G60360 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIA... Potri.006G026002
[exp]
5.19 0.8397
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.008G082301
[exp]
5.29 0.8818
AT3G61800 unknown protein Potri.014G099300
[exp]
7.34 0.8505
AT3G28360 ABCB16, PGP16 ATP-binding cassette B16, P-gl... Potri.001G417801
[exp]
8.12 0.8368
AT5G39710 EMB2745 EMBRYO DEFECTIVE 2745, Tetratr... Potri.009G105600
[exp]
8.66 0.8590
AT1G47750 PEX11A peroxin 11A (.1) Potri.002G134000
[exp]
8.66 0.8136
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.013G046150
[exp]
8.66 0.8509
Potri.005G130601
[exp]
11.40 0.8101
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(... Potri.019G087900
[exp]
11.53 0.8475 SDG907,SUVH3.1

Potri.006G239100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.