Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 135 / 4e-34 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G14440 121 / 5e-29 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 116 / 2e-27 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT1G30100 113 / 2e-26 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 95 / 2e-20 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G19170 90 / 9e-19 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G24220 75 / 4e-14 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239300 [exp] 815 / 0 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 810 / 0 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 802 / 0 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239402 [exp] 658 / 0 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1) Potri.018G042650 [exp] 552 / 0 AT3G63520 198 / 3e-56 carotenoid cleavage dioxygenase 1 (.1) Potri.001G393800 [exp] 127 / 3e-31 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G265900 [exp] 125 / 1e-30 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 124 / 5e-30 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G265600 [exp] 123 / 8e-30 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009513 [exp] 597 / 0 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10042829 [exp] 506 / 3e-174 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 130 / 7e-32 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 120 / 3e-28 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 117 / 9e-28 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 108 / 6e-25 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 105 / 8e-24 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10037874 [exp] 86 / 8e-20 AT3G63520 54 / 4e-09 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 89 / 2e-18 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 82 / 3e-16 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.006G239200.3 pacid=42770266 polypeptide=Potri.006G239201.1.p locus=Potri.006G239200 ID=Potri.006G239200.3.v4.1 annot-version=v4.1 ATGACGAATACATCAACAATGGCTTTTCATGTGAATTGCTCTGTACAGAGGAGGCGCCCTTCTCTCTTCCAAAACATTGATCGTTTTAAGACTAGTTTGT CTTCATCTTACAAGCCATTATTGAAAGAGTTGAAGCAACTTTCCTTGCAACTTGAAGTTTCCCAAATTATGAAAAATGCTTCAGTCAAACTTTTGGATGC CTTCGTCGATTCGATGTTCCAGTTTGCTGACCAGCCCATTCTTCCTTCTCAGAGTAACTTTGCACCAGTTGATGAATTGAATGAACCTTTTGTTATAACC AGCATCGAAGGCAAAATCCCAGATGATTTTCCAGAAGGTGTCTACATAAGAAATGGAGCAAATCCACTATTTGGTGGTCTAAAATCTACGACCTCCATGT TTGGGAAGACAGGTCACATATGGATAGAAGGAGAAGGAATGCTTCATGCTTTATACTTTGATAAAGATAGTGGCATTGGAAGCTGGACGGTCCTTTATAA CAGTAGACATGTTGAAACCGAAACCTTCAAAGTGGAGAAAAAAAGAAACAAGCCATCTTTTCTTCCAGCCATAGAAGGCAGTTCTCCAGCCATTTTGATA GCTTGCTTGTTAAATATGACTCTAGGCGATTGGGATATCAATGGAGCCTGGCATCGACCTTTCAACTCCCACCCAAAGACAGCACCAGGTACTGGAGAGT TGGTTGTATTTGGGGTGGATGCAATAAAACCTTACATGGAAGTGGGAGTCGTTTCTGCTGATGGAAAGAGACTAGTTCACAAGGTTGATCTCAAGTTGAA CAGGTGCCCCCTTAGTCATGACATGGGGGTTACGGAGAGGTATAATGTAATCATGGATTTTCCACTAACAATAGACTTACACAGACTCATCAAAGGCGGC CCATTAATAAAGTTTGATAACGAAGATTATGCAAGAATTGGGATTATGCCCCGGTATGGTGATGTGGACTCGGTTCGTTGGTTTGAGGTGGAACCAAATT GCACATTTCACATTCTTAATTGTTTTGAGGAAGGAGTTGAGGTTGTAGTGAGGGGATGCAGGTCCCTTGAATCAATTATATCAAAATCTTACGGTATGGA TTTGGAAGAATCTGAGTGGGTTTCAGGAAGACTAAGGAGTAAAGAACATGTTGAGCAGAATACTACACCTTCGTCGAACGATGAATTATTGTTCAGTCGA TCTTATGAATGGAGATTAAACATGGAAACCGGAGAGGTTAAGGAGAGAAACCTCACTGGAACTGAACTTTGTATGGAGTTTCCTATGATCAATCCAAGTC TCAATGACTTAAAAAATAAATTTGGCTACACCCAGATAGTCCATGAACCGGCAAGTAGTTCATCAGGCATGCCAAAATTTGGAGGTCTAGCCAAGTTGTA CTTTGATGAAACTTCGAGTAAGGAAGGGGAGCAATCGGAAGGGCATATAAAGGTGGAATACCATGAATTCGAGGGAAACACCTTCTGCACTGGATCTGCC TTTGTCCCTAAAGAAGGTGGTCTAGAAGAAGATGATGCATGGCTGGATCATCACTTTTGTTCATGA
AA sequence Show only first row Show all	>Potri.006G239200.3 pacid=42770266 polypeptide=Potri.006G239201.1.p locus=Potri.006G239200 ID=Potri.006G239200.3.v4.1 annot-version=v4.1 MTNTSTMAFHVNCSVQRRRPSLFQNIDRFKTSLSSSYKPLLKELKQLSLQLEVSQIMKNASVKLLDAFVDSMFQFADQPILPSQSNFAPVDELNEPFVIT SIEGKIPDDFPEGVYIRNGANPLFGGLKSTTSMFGKTGHIWIEGEGMLHALYFDKDSGIGSWTVLYNSRHVETETFKVEKKRNKPSFLPAIEGSSPAILI ACLLNMTLGDWDINGAWHRPFNSHPKTAPGTGELVVFGVDAIKPYMEVGVVSADGKRLVHKVDLKLNRCPLSHDMGVTERYNVIMDFPLTIDLHRLIKGG PLIKFDNEDYARIGIMPRYGDVDSVRWFEVEPNCTFHILNCFEEGVEVVVRGCRSLESIISKSYGMDLEESEWVSGRLRSKEHVEQNTTPSSNDELLFSR SYEWRLNMETGEVKERNLTGTELCMEFPMINPSLNDLKNKFGYTQIVHEPASSSSGMPKFGGLAKLYFDETSSKEGEQSEGHIKVEYHEFEGNTFCTGSA FVPKEGGLEEDDAWLDHHFCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239200 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.016G088000 [exp]	8.00	0.7777
					Potri.004G037750 [exp]	9.53	0.7451
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	11.18	0.7727
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	12.36	0.7818
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	13.85	0.7526
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	22.24	0.7314
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025800 [exp]	22.58	0.7320
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	30.98	0.7186
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	32.74	0.7086
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	36.74	0.6614

Compare expression of checked genes

Potri.006G239200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.