Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50390 280 / 5e-89 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 263 / 9e-83 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 256 / 9e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 251 / 6e-78 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 249 / 2e-77 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 229 / 5e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 206 / 2e-61 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 199 / 3e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 199 / 8e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 185 / 2e-53 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 267 / 2e-84 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 261 / 1e-81 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 258 / 5e-81 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 257 / 2e-80 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 257 / 4e-80 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 248 / 4e-76 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G051100 [exp] 246 / 5e-76 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 228 / 5e-70 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 228 / 6e-70 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011699 [exp] 557 / 0 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1) Lus10009510 [exp] 549 / 0 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 257 / 9e-81 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 257 / 2e-80 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 251 / 2e-78 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 246 / 2e-76 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 220 / 2e-66 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 219 / 2e-65 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 215 / 6e-65 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 215 / 2e-64 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G239600.1 pacid=42766975 polypeptide=Potri.006G239600.1.p locus=Potri.006G239600 ID=Potri.006G239600.1.v4.1 annot-version=v4.1 ATGGATTTCTATGGCAGGAAATCTCTCTTTAGCTTCATAACTGAAGAGAGAAATGCACCGCAAGAACTGAATGACCAAGAGCTTCAATTTAGCCCTCCAA GGCCTATCAAGAATGCGCCTATTCAATTTAAAGGAAGGGTGAATGCACCTATTCAAACTTCAGCTAGCATGGCGGCCTATCAAGAAATGAACGACCAGGA GCTTCAGTTTAGCCCTCCAAGGCCTTCTACAACTCATTCCAGCAAGCTTACCCTATTGCCACCATCTAGCCCAGAATCACCATGGACACTCTCTCCTCAT CATACCCCATCACCTTCTCTTCTCTACCATTGCATAGCCTCGCTTCATCGACATGAAGGTAATATATATTCTATTGCTGTCTCAAAAGGAATAGTCTTCA CCGGCTCTGAAAGCAACCGTATCCGTGCATGGAAGCAGCCGGATTGCATGGAAAGAGGTTATCTCAAGGCGGGTTCTGGTGAGATAAGAGCCATTTTAGC TTATGGTAATATTCTGTTCTCTGCACATAAAGACCTTAAAATTCGAATTTGGAACTTCGCAGTTTCAGATAATTTTAGAGCCAAAAAGGTCCTTACATTA CCTAAAAGAAGCTCATTTCTTATGTTTCCCAGACCTAACACCCAACAACACAAGGATTGTGTTTCTTGCATGGCTTATTACCATGCAGAAGGACTTTTAT ACACTGGATCATATGACAAAACAGTTAAAGTTTGGAGGGTTTCTGACAAAAAATGTGTAGATTCCTTTGTGGCTCATGAAGATAGTGTCAACGCTTTATT GGTGAACCAGGATGATGGGTGTGTTTTCACTTGCTCTGTTGACGGGTCAGTTAAAATATGGAGGAGAGTATATAGAGAGAATTCTCATACTCTAACCATG ACACTGAAATTCCAACAATCACCTGTCAATGCCTTGGCCTTAAGCTCATATTTCAACAATTGCTTTCTTTACTCAGGGTCATCGGATGGTACCATAAATT TTTGGGAGAAGGAGAAATTTTCTGGTAGGTTTAACCATGGTGGATTCTTACAAGGCCATCGTTTTGCAGTTCTTTGCCTAGTAGCTATAGAGAAGCTGCT ATTTAGTGGCTCAGAGGATACAACCATTAGGGTTTGGAGGAGAGAAGAAGGAAGTTATTTTCATGAATGTCTAGCTGTATTAGATGGGCATAGAGGACCA GTGAGGTGCCTGGCTGCTTGTTTGGAGATGGAAAAAGTTGTGATGGGGTTTCTGGTATACAGTGCAAGCTTGGACCAAACTTTCAAGGTATGGAGGGTTA AGGTTTTGCCTGAAGAGAAAAGGTACTTGGATTATAGAGAAGTCAGCGATTCAAGGTCAAAGGTAATGGAATATGAGATGAGTCCTGTTCTGTCTCCTTC ATGGGTAAAGAAGAAACTTAAAGGAGACTATTTTCAATAG
AA sequence Show only first row Show all	>Potri.006G239600.1 pacid=42766975 polypeptide=Potri.006G239600.1.p locus=Potri.006G239600 ID=Potri.006G239600.1.v4.1 annot-version=v4.1 MDFYGRKSLFSFITEERNAPQELNDQELQFSPPRPIKNAPIQFKGRVNAPIQTSASMAAYQEMNDQELQFSPPRPSTTHSSKLTLLPPSSPESPWTLSPH HTPSPSLLYHCIASLHRHEGNIYSIAVSKGIVFTGSESNRIRAWKQPDCMERGYLKAGSGEIRAILAYGNILFSAHKDLKIRIWNFAVSDNFRAKKVLTL PKRSSFLMFPRPNTQQHKDCVSCMAYYHAEGLLYTGSYDKTVKVWRVSDKKCVDSFVAHEDSVNALLVNQDDGCVFTCSVDGSVKIWRRVYRENSHTLTM TLKFQQSPVNALALSSYFNNCFLYSGSSDGTINFWEKEKFSGRFNHGGFLQGHRFAVLCLVAIEKLLFSGSEDTTIRVWRREEGSYFHECLAVLDGHRGP VRCLAACLEMEKVVMGFLVYSASLDQTFKVWRVKVLPEEKRYLDYREVSDSRSKVMEYEMSPVLSPSWVKKKLKGDYFQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50390			Transducin/WD40 repeat-like su...		Potri.006G239600 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	1.00	0.9923
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128100 [exp]	2.00	0.9829
					Potri.018G132951 [exp]	2.00	0.9851
AT2G45260			Plant protein of unknown funct...		Potri.013G155400 [exp]	2.23	0.9820
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	5.19	0.9850
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.018G099201 [exp]	6.16	0.9448
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	7.00	0.9761
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	8.36	0.9737
AT4G09530			SAUR-like auxin-responsive pro...		Potri.013G111000 [exp]	9.05	0.9436
AT1G73680		ALPHADOX2 ,ALPH...	alpha dioxygenase (.1.2)		Potri.012G049500 [exp]	9.16	0.9804

Compare expression of checked genes

Potri.006G239600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.