Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28880 594 / 0 CKL3 casein kinase I-like 3 (.1) AT4G28860 578 / 0 CKL4 casein kinase I-like 4 (.1.2) AT5G57015 503 / 1e-177 CKL12 casein kinase I-like 12 (.1) AT4G26100 502 / 3e-177 CKL1, CK1 casein kinase 1 (.1) AT1G72710 499 / 2e-175 CKL2 casein kinase 1-like protein 2 (.1) AT1G03930 493 / 2e-173 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT3G23340 491 / 5e-173 CKL10 casein kinase I-like 10 (.1) AT5G44100 492 / 8e-173 CKL7 casein kinase I-like 7 (.1) AT2G19470 489 / 4e-172 CKL5 casein kinase I-like 5 (.1) AT5G43320 489 / 1e-171 CKL8 casein kinase I-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041000 [exp] 832 / 0 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.018G084500 [exp] 614 / 0 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1) Potri.018G065900 [exp] 509 / 2e-179 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 506 / 3e-178 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 505 / 5e-178 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 503 / 5e-177 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 502 / 5e-177 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 498 / 3e-175 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 493 / 3e-173 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043233 [exp] 606 / 0 AT4G28880 614 / 0.0 casein kinase I-like 3 (.1) Lus10011113 [exp] 592 / 0 AT4G28880 596 / 0.0 casein kinase I-like 3 (.1) Lus10037621 [exp] 506 / 1e-178 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 504 / 7e-178 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10021175 [exp] 502 / 8e-177 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10027628 [exp] 502 / 1e-176 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10006018 [exp] 498 / 8e-176 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10042570 [exp] 496 / 3e-174 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 494 / 7e-174 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10011812 [exp] 494 / 2e-173 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G239900.3 pacid=42770659 polypeptide=Potri.006G239900.3.p locus=Potri.006G239900 ID=Potri.006G239900.3.v4.1 annot-version=v4.1 ATGGAGAGAATTATAGGAGAGAAGTATAAATTAGGTCGCAAAATCGGAAGCGGATCCTTCGGTGAAATCTTTCTCGCTACTCACATTCACTCTGGTGAGA TCGTTGCTGTCAAAATTGAAAATAGGAGTACGAAGCATCCGCAATTACTCTACGAAGCCAAACTGTATAAGATTCTTGGCGGAGGAAGTGGTATCGCGAA TATAAAATGGTGCGGAGTTGATGGAGAAGATAACGTGTTAGTAATTGATTTGTTAGGACCGAGTCTCGAAGACTTGTTTGTGTACTGTGGGAGGAAGTTT TCGCTTAAAACAGTCTTAATGTTGGCTGATCAGATGATTGCGAGGATTGAATACATGCATGTGAAGGGGTTTTTGCATAGGGATATTAAACCGGATAATT TCCTCATGGGTCTCGGAAGGAAAGCTAGTCAGGTCTATGTCATTGATTTTGGACTTGCGAAAAGATATAGGGATCCGACAACACACCAACATATTACTTA CAGAGAGAACAAAAACTTAACAGGAACTGCTAGGTATGCAAGTTGCAATACTCATCTAGGAATTGAGCAAAGCCGTCGGGATGATTTGGAGTCTATTGGC TATGTTCTTTTATACTTTTTGAGAGGAAGCCTTCCATGGCAGGGTCTGAAAGCGGCAACAAAGAAGCAAAAGTATGATAAAATATGCGAGAAGAAGTTAT CAACTCCAATTGAGGTGCTATGCAAGTCGCATCCAGTGGAGTTTGCTTCTTACTTCCATTATTGCCACTCATTAACTTTTGACCAACGACCTGATTATGG ATTTCTGAAGCGCCTCTTTCGTGACTTGTTTACTCGGGAAGGATTTGAGTTTGATTTTGTTTTTGACTGGACTATCCTGAAGTACAAGCAGACACAGAGG CCAAAGCCACAACCTCAATCATCTGACCTGCAGCCAAATTCTAGAGTGACAAGCAGTCGAGCAATGGCAATGGATCTCAATAAGGATAAAGGGGTCAATG GTGCCTCTTATTCTGCTGAGGTTGCTGATCACAGAGGATCAAATAAGGTTGCTCGTCCAGATACTCATATGCAGTTGGGGTCATCATTTTCTCGGAATGT AACTGCTGATAATCCACTTGACAAACATAATATGAACAATGCATCAATGCCGTCGACTTCTTTTGTTCCGCCCAGTGCATCCAGAAGGGATTTTATGAAA CTAGATGGGTCGACTGATGCTGTGAACATTGGCCGTGGGCTTGGGAACAGAGCTGGTGCTTCAAGCAGGTTGATGAGAATTTCTTCAGCGAAGTAA
AA sequence Show only first row Show all	>Potri.006G239900.3 pacid=42770659 polypeptide=Potri.006G239900.3.p locus=Potri.006G239900 ID=Potri.006G239900.3.v4.1 annot-version=v4.1 MERIIGEKYKLGRKIGSGSFGEIFLATHIHSGEIVAVKIENRSTKHPQLLYEAKLYKILGGGSGIANIKWCGVDGEDNVLVIDLLGPSLEDLFVYCGRKF SLKTVLMLADQMIARIEYMHVKGFLHRDIKPDNFLMGLGRKASQVYVIDFGLAKRYRDPTTHQHITYRENKNLTGTARYASCNTHLGIEQSRRDDLESIG YVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGFEFDFVFDWTILKYKQTQR PKPQPQSSDLQPNSRVTSSRAMAMDLNKDKGVNGASYSAEVADHRGSNKVARPDTHMQLGSSFSRNVTADNPLDKHNMNNASMPSTSFVPPSASRRDFMK LDGSTDAVNIGRGLGNRAGASSRLMRISSAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.006G239900 [exp]	0	1
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.016G053700 [exp]	5.00	0.7349
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	17.29	0.7565
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.015G138500 [exp]	17.86	0.7155
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.007G106800 [exp]	25.74	0.7375	Pt-MAP3.2
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	31.74	0.7111
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	32.03	0.7221
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	33.04	0.7152
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	34.64	0.6927
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.003G045700 [exp]	38.72	0.6359	Pt-ATRLI1.2
AT2G46900			unknown protein		Potri.002G183500 [exp]	44.45	0.7117

Compare expression of checked genes

Potri.006G239900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.