Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 629 / 0 Major facilitator superfamily protein (.1) AT3G16180 606 / 0 Major facilitator superfamily protein (.1) AT1G69870 412 / 3e-137 NRT1.7 nitrate transporter 1.7 (.1) AT1G68570 395 / 5e-131 Major facilitator superfamily protein (.1) AT5G62680 382 / 2e-125 Major facilitator superfamily protein (.1) AT1G18880 377 / 3e-124 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 372 / 2e-121 Major facilitator superfamily protein (.1) AT1G27080 362 / 3e-118 NRT1.6 nitrate transporter 1.6 (.1) AT5G28470 357 / 1e-116 Major facilitator superfamily protein (.1) AT5G11570 350 / 7e-115 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040301 [exp] 819 / 0 AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 681 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 575 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 574 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 573 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 566 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 560 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 558 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 548 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 631 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 605 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 555 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 551 / 0 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 508 / 5e-176 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10038618 [exp] 447 / 1e-151 AT1G52190 377 / 5e-124 Major facilitator superfamily protein (.1) Lus10036669 [exp] 425 / 3e-142 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 422 / 2e-141 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10033106 [exp] 405 / 8e-135 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 402 / 4e-133 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.006G240000.1 pacid=42767887 polypeptide=Potri.006G240000.1.p locus=Potri.006G240000 ID=Potri.006G240000.1.v4.1 annot-version=v4.1 ATGGAAAACTCAATAGTAGAGGAGAAGATGGTTCTCATCCCTAAGGACAAGGACCCCAGAAAGGGTGGCCTGAGGACCATGCCCTTCATCATAGTTAATG AGGCATTTGAGCGGGTGGCTAGCTATGGGCTGATGCCAAATATGATATTCTACTTGATGAAAAACTATCGCATGGAGGCTGCAAGTGGGTCAACCATTCT CTTCTTGTGGTCTGCTATGTCTAATGGATTGTCCATTTTCGGAGCCTTCCTCTCCGATTCATTCATGGGTCGGTATCTGGTCATCTCTTTGGGATCATTC TGCAGCCTTCTTGGGATGATTCTTCTTTGGTTAACTGCCATGATCCCACAACTAACCCCTCCACCTTGTGACCGATTTACTAATGTCTGCAGCTCAGCTA CTGCAGGCCAACTAGCTACTTTATTCTCCTCTTTCGGCCTTATATCAATCGGAGCCGGTTGCATAAGACCTTGCTCTATTGCCTTTGGGGCAGACCAACT AGACAATAAAGAGAACCCCAATAATGAGAGTGTCTTACAGAGTTTCTTTAATTGGTATTATGCTGCGACAGGATTATCAACAATTATAGCATTTACTGCT ATTGTCTACGTTCAAGATAACCTCGGTTGGAAAGTTGGATTTGCTATTCCTGCAGTTCTCATGTTCTTCTCTGCTCTAATGTTTTTGGTGGGTTCTTCCC AGTACGTAAAAGTGAAGGCCTCCACGAGCTTATTTACTGGGTTTGTTCAGGTTTTAGTTGCAGCATTCAGGAACAGAAAGCTCAGTCTATCTCACAGTAG CATTGAACAGTATTATTACCACAGTGATGATTCTGAGTTCCAGATCCCCACGGTTAATTTAAGGTGTTTAAACCGAGCTTGTATCATAACAGACCCTGAT AGGGATGTAAATCCGGATGGGTCAGCTTCAAATCCATGGAGTCTATGTACAGTTGATCAGGTAGAGTCACTGAAAGCTCTGCTTAGAGTCATCCCCATTT GGTCTACAGGCATCATGATGCAAATCAACTTAAATCAAAACTCATTTGCCACCCTCCAAGCAAATACCATGGACAGGCAAATCTTTAATTTTGAACTCCC AGCAGGATCTCTCAATGTGTTTCTGGTTCTCACTCTCACAATCTGGCTAACCTTCTATGACCGAATTCTGCTACCATTGTTAGCAAAATTCACTGGCAAG CAACGCGGCGGGCCTAGTCCTACAGTTAGGATAGGAATTGGTTTGCTAATCCCAATTGCAGCAAGGGCAATGTCAGCAGTAGTAGAAACCATAAGAAGGA GAACTGCTATTGAGGAAGGACTAGAAGACCAACCAGATGGTGTAGTGAACATGTCAGTAGTCTGGCTTTTGCCACCAATTATCCTACTTGGATTGGCTGA AGCTTTTAATTCAATTGGACAGATAGAATTCTACTACTCTCAGTTCCCTAAAAGCATGTCTAGCATTGCGGTGGCTATTTTCACTTTCGGAACTGCCATG GCTGACATGATAGGGAGTGGTTTGGTGGATGTTGTGGATAGAGTTACATCTAGAGGAGGGCAAGAGAGCTGGTTGTCTAGTAATCTTAACAAGGGTCGGT TAGATGATTATTACTGGCTGATTACTGTCTTGAGTATAATCAATTTTGTGTATTTTCTTGTTTGCTGTCGGACTTATGGACGCACTAAGGACGAAAAGGA GGAGCGTCTGCTGGAGTAG
AA sequence Show only first row Show all	>Potri.006G240000.1 pacid=42767887 polypeptide=Potri.006G240000.1.p locus=Potri.006G240000 ID=Potri.006G240000.1.v4.1 annot-version=v4.1 MENSIVEEKMVLIPKDKDPRKGGLRTMPFIIVNEAFERVASYGLMPNMIFYLMKNYRMEAASGSTILFLWSAMSNGLSIFGAFLSDSFMGRYLVISLGSF CSLLGMILLWLTAMIPQLTPPPCDRFTNVCSSATAGQLATLFSSFGLISIGAGCIRPCSIAFGADQLDNKENPNNESVLQSFFNWYYAATGLSTIIAFTA IVYVQDNLGWKVGFAIPAVLMFFSALMFLVGSSQYVKVKASTSLFTGFVQVLVAAFRNRKLSLSHSSIEQYYYHSDDSEFQIPTVNLRCLNRACIITDPD RDVNPDGSASNPWSLCTVDQVESLKALLRVIPIWSTGIMMQINLNQNSFATLQANTMDRQIFNFELPAGSLNVFLVLTLTIWLTFYDRILLPLLAKFTGK QRGGPSPTVRIGIGLLIPIAARAMSAVVETIRRRTAIEEGLEDQPDGVVNMSVVWLLPPIILLGLAEAFNSIGQIEFYYSQFPKSMSSIAVAIFTFGTAM ADMIGSGLVDVVDRVTSRGGQESWLSSNLNKGRLDDYYWLITVLSIINFVYFLVCCRTYGRTKDEKEERLLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	2.82	0.9257
					Potri.017G027900 [exp]	2.82	0.9289
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	3.00	0.9298	Pt-WRKY6.1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	4.89	0.9278
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	5.00	0.9251
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	6.48	0.9248
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	9.48	0.9082
					Potri.004G188300 [exp]	10.48	0.9173
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	11.22	0.9185	Pt-SYP121.1
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	11.66	0.9213

Compare expression of checked genes

Potri.006G240000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.