Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32770 309 / 7e-103 ATSDX1, VTE1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040200 [exp] 327 / 2e-109 AT4G32770 675 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009501 [exp] 324 / 3e-108 AT4G32770 713 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1) Lus10011696 [exp] 311 / 5e-103 AT4G32770 700 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14249 [poplar] [flax] Tocopherol_cycl Tocopherol cyclase
Representative CDS sequence Show only first row Show all	>Potri.006G240100.1 pacid=42768155 polypeptide=Potri.006G240100.1.p locus=Potri.006G240100 ID=Potri.006G240100.1.v4.1 annot-version=v4.1 ATGAGCAGAACTTCTAATTGCAGGACAGATTATGTTAAAACTGTGAAAATTGCTCGTTGGGAGTACAGGACTCGTCCCATTTATGGATGGGGTAGCGTTG GGTCTAAACAAAATTCTACTGCAGGTTGGCTTGCTGCTTTTCCTGTATTCGAGCCTCATTGGCAAATATGCACGGCAAGCGGGCTTTCAACAGGCTGGAT AGAGTGGGAGGGCGAAAGATTTGAGTTCAAAGATGATCCTTCTTGTTCAGAAAAGAACTGGGGTGGAGCCTTCTCAAGAAAATTGTTTTGGCTTCAGTGT AATGTCTTCGAAGGTACAAAAGGAGAGGTTACTTTGACAGCAGCTGGTGGAGTGAGGCAGTTGCCTGGACCAGCTGGCTCTGAGATACATGAAAATGCTG CACTGGTTAAATTGGAGGCAAGAGCAAAGGATTTGGGAACACCTATACTTGCTCCAGCTTGTATAGATACATGTTCTGGTGTTCTGAAATTGCAAATGTG GGAGTGGAGACAGGACGGAACTAGGGGAAAGGTAATTTTGAAAGTTACGAGTGACATGGCAGCAGTGGAAGTTGGAGGAGGACCATGGTTTACCAATTGG AAAGGCAAGACATCTGCTCCAGAGCTCCTTAGACGTGCTCTTCGAGTTCCCATTGATCTGGATGCAGTTTACAATTCTGTTCCATTCTTCAAGCCCCCCG GTTTACAGTCAGTTGGCTCATGCTTTCGTTCCACCAAAGGAATCTCCTTTTCACTACTTGAAATAGAAAAAGAAATATGGCAGAGTGTGGGTGGGGCGGT TTGCATGAACCTGAGGATCAGTCTGGCCAAATGCTATGGATATCATTGCTATCTAAGAAGCAAATATATATCCGTGGCTTTGAATATAATCTCTAAATGT TGA
AA sequence Show only first row Show all	>Potri.006G240100.1 pacid=42768155 polypeptide=Potri.006G240100.1.p locus=Potri.006G240100 ID=Potri.006G240100.1.v4.1 annot-version=v4.1 MSRTSNCRTDYVKTVKIARWEYRTRPIYGWGSVGSKQNSTAGWLAAFPVFEPHWQICTASGLSTGWIEWEGERFEFKDDPSCSEKNWGGAFSRKLFWLQC NVFEGTKGEVTLTAAGGVRQLPGPAGSEIHENAALVKLEARAKDLGTPILAPACIDTCSGVLKLQMWEWRQDGTRGKVILKVTSDMAAVEVGGGPWFTNW KGKTSAPELLRRALRVPIDLDAVYNSVPFFKPPGLQSVGSCFRSTKGISFSLLEIEKEIWQSVGGAVCMNLRISLAKCYGYHCYLRSKYISVALNIISKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.006G240100 [exp]	0	1
AT2G16365			F-box family protein (.1.2.3.4...		Potri.004G157000 [exp]	2.00	0.8519
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067900 [exp]	4.47	0.8224
AT5G26250			Major facilitator superfamily ...		Potri.008G150800 [exp]	5.65	0.8653
AT5G26250			Major facilitator superfamily ...		Potri.008G150700 [exp]	5.74	0.8573
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.001G023900 [exp]	6.32	0.8797
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	16.52	0.7993
AT4G19160			unknown protein		Potri.003G033300 [exp]	16.97	0.8061
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	19.49	0.8021
AT4G36980			unknown protein		Potri.007G044100 [exp]	19.89	0.8205
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	22.80	0.8244

Compare expression of checked genes

Potri.006G240100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.