Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11560 1387 / 0 catalytics (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039800 [exp] 1823 / 0 AT5G11560 1419 / 0.0 catalytics (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011690 [exp] 1477 / 0 AT5G11560 1371 / 0.0 catalytics (.1) Lus10022144 [exp] 1203 / 0 AT5G11560 1116 / 0.0 catalytics (.1) Lus10022143 [exp] 146 / 8e-41 AT5G11560 144 / 5e-41 catalytics (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07774 [poplar] [flax] EMC1_C ER membrane protein complex subunit 1, C-terminal CL0186 [poplar] [flax] Beta_propeller PF13360 [poplar] [flax] PQQ_2 PQQ-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G240300.1 pacid=42767413 polypeptide=Potri.006G240300.1.p locus=Potri.006G240300 ID=Potri.006G240300.1.v4.1 annot-version=v4.1 ATGGCCATGGCGATTAGGTCTTTGCTTATCTTTTTATTTATTCTATCACTTACTGTCCCTACCTTTTCTCTTCATGAAGATCAAGTTGGTCTCATGGACT GGCATCAAAAGTACATAGGGAAAGTGAAGCACGCTGTGTTCCAAACACAAAAAACGGGTCGAAAGCGTGTTCTTGTTTCTACTGAAGAGAATGCTATTGC TTCTCTTGATCTCCGGCATGGCGAGATTTTTTGGAGGCATGTTCTTGGGGCCAATGATGCTATCGATGGAATCGACATTGCCATGACAAAATATGCTATT ACCCTTTCTTCAGGAGGAAGCATTCTACGAGCATGGAATCTTCCTGATGGGCAGATGGTGTGGGAATCTTTTCTTCAGGGACCAATCGACTCTAAGTCAT TCTTGTTTGTGTCGACAAGCTCGAAAGTTGACAAGGACAACACAATCCTTGTTTTTGGTAAAGGAAGTCTCCATGCTGTTTCAAGCATACATGGTGAAAT TGTTTGGAAGATAGATTTTCCTTCTGAAAGTTTTGAGGTTCAGGAGGTAATTCAGCACCATGATGGCAATACAATATACGTGGTGGGATTTGTTGGTTCT TCCCAGTTTGATGTGTACCAAATCAATGCTAAGAATGGAGAGCTCCTAAAACATGACAGTGCAGCCGTTGATGGTGGGTTTTCAGGGGAAGTTTCTCTAG TTTCAAGAGCCAAACTTGTGGTGCTGGATGCTGCTAGGTCAACTTTGTTAACAATAAGTTTTCAGAGCGGAGAAATCAGCTTTCAGAAAACATACATCTC AGATCTAGTTGAGGATTTCTCAGGGATTGCAGTGATATTACCTTCAAAACTTACTGGTTTGTTTGCTGTGAAAACCAATACAGCTACAGCATTTATTAGT GTGTCAAGTGAAGGTAAGTTGGAGGTGGTTGACAAAATCAAGCATGCAACAGTTATTAGTAATGTTCTTTCAATCTCAGAGGACCAACAGGCTTTTGCAC TGGTTCAGCATGGGGGCAATGACATTCACCTCAATGTGAAGCAAGTTCATGACTGGAACAGTGATTTGCTAAAAGAGAGAATCAAGCTGGACAAGCAAAG AGGACTTGTCCATAAGGTTTTCATTAACAATTATGTCCGGACTGATAAGTCTCATGGATTTAGGGCTTTGATTGTTATGGAAGATCATTCATTGTTGCTG TTACAACAAGGCGAGGTTGTCTGGAGTAGGGAGGATGGCCTTGCCTCAATAATAGGTGTTACCACGTCAGAACTTCCTGTGGAAAGGGAAGGTGTATCTG TGGCAAAAGTGGAGCAGAACCTCTTCGAATGGCTTAAGGGACACATGCTGAAGGTTAAGGGTACCTTAATGCTTGCAAGTGCTGAGGATGTAGCAGCCAT TCAAGGCATGAGGTTGAAAAGCTCTGAGAAAAGTAAAATGATCAGGGACCATAATGGATTCCGAAAGCTGCTTATTGTGCTCACTAAATCCAGGAAACTT TTCGCATTGCACACTGGAGATGGACGGATTGTCTGGTCTCTCTTATTGAACTCTCTACGTCAAACAGAAGCATGTGAAAATCCAACTGGGATTAATGTGT ACCAGTGGCAAGTTCCTCATCATCATGCTATGGATGAAAATCCATCTGTCCTGGTTGTTGGCAGGTGCAGAACTGGTACTGATGCACCGGGAATATTTTC CTACGTTGATACTTACACAGGGAAGGAACTTAAGTCTTTTGGTCTTGATCATTCTGTTGCACAAGTAATTCCACTCCCGCTTACAGATTCAACTGAACAA CAGCTGCATCTACTAATAGATGCTAATGGACAAGCACATTTGTACCCAAGAGCACCTGAGGCTGCTGCCATTTTTCAACGTGAGTTTTCAAACATCTACT GGTACTCGGTAGAAGCTGACAAGGGTGTTATTAAGGGACATGGATTGCAGAGCAATTGTGATGGTGAAGTTGCAGACAACTATAGTTTTGGTACCAGAGA AATATGGTCCATTGTATTCCCCTCAGAATCAGAAAAGATCATTTCAACCGTAACAAGAAAATCAAATGAGGTTGTTCATACCCAAGCAAAGGTTATAGCT GATCAAGATGTGATGTACAAGTATATATCAAAAAAGTTGCTTTTTGTGGCCACTGTTTCACCAAAAGCCAGTGGAGATATTGGATCAGCCACACCAGGAG AATCACAGTTGGTTGTCTATGTTGTTGATACTGTCACTGGTCGTATATTACACCGAATGACTCATCATGGCTCACAGGGCCCTGTCCATGCAGTTTTTAG TGAAAACTGGATTGTCTACCACTACTTCAATCTCAGAGCACACAGATACGAGATGACAGTTATTGAAATTTATGATCAGTCCCGGGCAGACAACAAAGAT GTTTTAAAGCTTGTTCTTGGAAAGCACAATCTCACTTCACCTATTTCTTCGTATTCGCGACCAGAGGTCACAACAAAGTCACAGTCTTACTATTTCACCC ATTCTATCAAAGCAATAACAGTTACATCAACTGCTAAGGGTATCACTTCGAAGCATCTTCTTATTGGGACAATTGGTGATCAGGTCTTGGCAATGGATAA GCGTTTCTTTGACCCTCGTAGGTCAGTTAACCCCACACAATCAGAGAAGGAAGAAGGAATTTTACCTCTTACAGATTCATTACCTATCATTCCTCAGTCG TATGTTACACACTCCCATAAAGTGGAGGGGCTACGAGGCATAGTAACAGTGCCTGCCAAGCTGGAGTCAAACACCCTTGTCTTTACATATGGTGTTGATC TCTTTTTCACTCGCCTTGCACCCTCAAGGACCTATGATTCTCTTACAGAGGATTTTAGCTATGCCCTGCTGCTCATAACCATTGTTGCACTTGTCGTGGC AATCTTCGTGACTTGGGTCCTGTCCGAGAAGAAAGATCTAAGTGATAAATGGAGGTGA
AA sequence Show only first row Show all	>Potri.006G240300.1 pacid=42767413 polypeptide=Potri.006G240300.1.p locus=Potri.006G240300 ID=Potri.006G240300.1.v4.1 annot-version=v4.1 MAMAIRSLLIFLFILSLTVPTFSLHEDQVGLMDWHQKYIGKVKHAVFQTQKTGRKRVLVSTEENAIASLDLRHGEIFWRHVLGANDAIDGIDIAMTKYAI TLSSGGSILRAWNLPDGQMVWESFLQGPIDSKSFLFVSTSSKVDKDNTILVFGKGSLHAVSSIHGEIVWKIDFPSESFEVQEVIQHHDGNTIYVVGFVGS SQFDVYQINAKNGELLKHDSAAVDGGFSGEVSLVSRAKLVVLDAARSTLLTISFQSGEISFQKTYISDLVEDFSGIAVILPSKLTGLFAVKTNTATAFIS VSSEGKLEVVDKIKHATVISNVLSISEDQQAFALVQHGGNDIHLNVKQVHDWNSDLLKERIKLDKQRGLVHKVFINNYVRTDKSHGFRALIVMEDHSLLL LQQGEVVWSREDGLASIIGVTTSELPVEREGVSVAKVEQNLFEWLKGHMLKVKGTLMLASAEDVAAIQGMRLKSSEKSKMIRDHNGFRKLLIVLTKSRKL FALHTGDGRIVWSLLLNSLRQTEACENPTGINVYQWQVPHHHAMDENPSVLVVGRCRTGTDAPGIFSYVDTYTGKELKSFGLDHSVAQVIPLPLTDSTEQ QLHLLIDANGQAHLYPRAPEAAAIFQREFSNIYWYSVEADKGVIKGHGLQSNCDGEVADNYSFGTREIWSIVFPSESEKIISTVTRKSNEVVHTQAKVIA DQDVMYKYISKKLLFVATVSPKASGDIGSATPGESQLVVYVVDTVTGRILHRMTHHGSQGPVHAVFSENWIVYHYFNLRAHRYEMTVIEIYDQSRADNKD VLKLVLGKHNLTSPISSYSRPEVTTKSQSYYFTHSIKAITVTSTAKGITSKHLLIGTIGDQVLAMDKRFFDPRRSVNPTQSEKEEGILPLTDSLPIIPQS YVTHSHKVEGLRGIVTVPAKLESNTLVFTYGVDLFFTRLAPSRTYDSLTEDFSYALLLITIVALVVAIFVTWVLSEKKDLSDKWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11560			catalytics (.1)		Potri.006G240300 [exp]	0	1
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.016G019800 [exp]	7.28	0.7177
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Potri.016G042100 [exp]	12.04	0.6912	Pt-GPT.3
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	16.43	0.6909
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	32.55	0.6916
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	40.34	0.6080	Pt-GR1.2
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.012G064500 [exp]	43.06	0.6180
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	43.30	0.6553
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	47.95	0.6410
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	54.38	0.6484
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	58.37	0.6042

Compare expression of checked genes

Potri.006G240300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.