Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11550 179 / 1e-53 ARM repeat superfamily protein (.1) AT1G49780 69 / 1e-12 PUB26 plant U-box 26 (.1) AT3G19380 57 / 9e-09 PUB25 plant U-box 25 (.1) AT2G35930 41 / 0.0008 PUB23 plant U-box 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100200 [exp] 83 / 3e-17 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 82 / 5e-17 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.008G137700 [exp] 54 / 6e-08 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.018G039701 [exp] 46 / 7e-06 ND / Potri.010G103100 [exp] 46 / 3e-05 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011691 [exp] 207 / 7e-66 AT5G11550 160 / 2e-48 ARM repeat superfamily protein (.1) Lus10014073 [exp] 85 / 2e-18 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10019842 [exp] 83 / 3e-18 AT1G49780 276 / 3e-92 plant U-box 26 (.1) Lus10007511 [exp] 45 / 9e-05 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10013584 [exp] 43 / 0.0003 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10040834 [exp] 43 / 0.0003 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 43 / 0.0004 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G240400.1 pacid=42770633 polypeptide=Potri.006G240400.1.p locus=Potri.006G240400 ID=Potri.006G240400.1.v4.1 annot-version=v4.1 ATGAAAACCCACCATCCAAAACTCAAAACACAGCCACGACCACTCTTTTTTTGTGGTTTCTTTCGCCAATGCACAGAAACTACTTTAAGTCCCACTACAC CCAACCCACCTGCTCTTCCTATCTCCTCCACTATTCCTACTCCAGCACCACCACCCCAAACAGCAGCAGCACCACCTCCAGCACCACCACCACCACCACA ACAATTACCTAACCAACCCCACCAAAAGTCCACCCAAGCTGAATCCTCTTCCTCCTCCTCCTCCACTACCACCTCCCAAAGTTTCACTCAATGGAGATTC CCTCTCTCGAACTCCCCACTCCACCAACCCAGACCCGAACCCGAACCCGAACCCGAACCGAATCAAGACTCCGCCTTTATACCACCGTTGGCTCCTCCCA TGCACCCCAACGACCTGCAAGAACTCCTCCGCCTGGCTGAGCTGCAACTTACCAACGGCTCAGAAACTGAGCAACTTTCTGCTCTATATCTCTTAGAACG CTCACTCGTACCCGACCCACCATCCGACCCGGTTTGCTCACCCGAATTAATGCGCGGGGTGGTGGCAAATTTGAAAAACAAAGCAGGGGTAAAACCGGCA ACAAAAGTCTTATTGGCACTTTGCTTGGCGGAGGCCAACCGCCACGTTGCGGTGGAAGCTGGCGCGGTGGGGACGGTGGTGGAAGTGGCGATGGAGCTCG ACGGATCTCCTGCGGAGAGGGCATTGGCGGCGTTGGAGCTGACTTGTACGGTGGCTGAGGGGGCGGCAGAGCTCCGGAACCACGCACTGGCGGTGCCGGT AATGGTGACAATGATGGGTAAAATGGCTGGGAGGGGGAAAGAGTATGCGATAAGTGCTCTCGCGGTGATTTATGGGAGTGGCGGAGTTGGGTCAGATGGT GAGCAAACTCTTCATGCGCCGCCAGAGGAGGTGGCGCGTGCAGTGGCGTTGGCTTTACAAGGAGACTGTACTGCTAGAGGGAGGAGGAAGGGTGCCCAGC TCTTGAAGGCTCTTCAAGAATATGGACGGGTAGATTCAACTCAAGAGGTGAATGAACAGCCGTGA
AA sequence Show only first row Show all	>Potri.006G240400.1 pacid=42770633 polypeptide=Potri.006G240400.1.p locus=Potri.006G240400 ID=Potri.006G240400.1.v4.1 annot-version=v4.1 MKTHHPKLKTQPRPLFFCGFFRQCTETTLSPTTPNPPALPISSTIPTPAPPPQTAAAPPPAPPPPPQQLPNQPHQKSTQAESSSSSSSTTTSQSFTQWRF PLSNSPLHQPRPEPEPEPEPNQDSAFIPPLAPPMHPNDLQELLRLAELQLTNGSETEQLSALYLLERSLVPDPPSDPVCSPELMRGVVANLKNKAGVKPA TKVLLALCLAEANRHVAVEAGAVGTVVEVAMELDGSPAERALAALELTCTVAEGAAELRNHALAVPVMVTMMGKMAGRGKEYAISALAVIYGSGGVGSDG EQTLHAPPEEVARAVALALQGDCTARGRRKGAQLLKALQEYGRVDSTQEVNEQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11550			ARM repeat superfamily protein...		Potri.006G240400 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	19.87	0.7860
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	19.97	0.7896
					Potri.013G107650 [exp]	23.08	0.7541
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Potri.004G163800 [exp]	24.97	0.7380
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Potri.015G100200 [exp]	26.64	0.7554
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	27.71	0.7678
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	29.58	0.7629
AT1G53163			unknown protein		Potri.001G398000 [exp]	31.62	0.7577
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	31.73	0.7468
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	52.82	0.7525

Compare expression of checked genes

Potri.006G240400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.