Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11530 281 / 5e-78 EMF1 embryonic flower 1 (EMF1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039500 [exp] 2094 / 0 AT5G11530 187 / 7e-48 embryonic flower 1 (EMF1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009490 [exp] 518 / 2e-161 AT5G11530 63 / 1e-09 embryonic flower 1 (EMF1) (.1) Lus10011692 [exp] 504 / 2e-156 AT5G11530 64 / 5e-10 embryonic flower 1 (EMF1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G240500.8 pacid=42768375 polypeptide=Potri.006G240500.8.p locus=Potri.006G240500 ID=Potri.006G240500.8.v4.1 annot-version=v4.1 ATGGAAAGGACTATGTTAGTGGAGAAGAATCATCCTGGTAGCCATTCAAAACTTGTCTCCAAGGTGGAATCATCTATTAGGATCGATTCCATAACAATTG ACCTGGACAATGTTGATGAGAAAGTTGAGGCAGAAAAATGCTCACATTTTTCTATGCGTGGATATGTATCTGAAATTCGTAAACGAGACTGGAAGATCTG TTGGCCGTTTGTGTCAGATGGTGACAGTAATAACTATGAGGAGCAAGCATGCCTTCTTCCTCCTTTACATGTTCCAAAATTCCGATTTTGGCGTTGTCAG AACTGTGTGTGGGAAGTTGATGCCACTGCGAACTGTTACGGAAGTACTGCTCTAAAATCATGCAGTACTGGATTCAAATCCACTAAAGTTTGTTCCCATG CACCAATCCTTGGTGATGATGCAATGCTACCATCTGATGTTCAGGGAGCTGCAAATCAAGAAATTCCCGAGGGAACACAGGCTGATGCTTTTGCCAGTTT GACCAATACCAGTAAATGTCATCATTCTCAGTCTATTGATAAGAATGAAAGGAAGACTAAAGATGAAAATGTTTCCAACATAGGGAAAAGTGTGGGTTCA GAAGATAATTTGAAGCAGGAAAATCATAGACTGGCATGTGTAGCAACTGAAGTTGTTTCAAGCCCAATTCAGAAGACAGATCTTACAGATAAAATAGCAG CTTTCAAGTCAAAATGTATCAACCTATGTGAGCCAGGCTGTGGTCATCATGAAGTAGTTGCTGCTGAGTTTGCTAGAAATCTTAATTGCATGGTAAACAA TGCTACTGAAATTTGTGAAGCGGGAAAAGAAACTTCCATAGATGATCAATACAAAGAGATAATAACTCGTGGGGCATCTGGAGAAGCAGGTAACATTGAT GATGGGGCACTCACTGCTGACAAGGATCCTGTGAGCCGCCCTTCCCTGGAATTAGATGAGTATGATGATCCTTCATCTGAAAGCACTGATATCATGGTTG GTAATAATTCTCAGGATGTTCACCATGAAAATTCAAGTGGTTTGCATCGTAGGAAAACTCGAAAGGTGCGCTTGTTGACTGAATTGTTGTGTGAAAATGG GGATGGAGACACTGATAACCAAACTCAGTATTCTCTGCCCCATGCCTTTCCTGATGCATCTGCTGGAGTTGACAAGGTTCCTGTTCTCCAAGGGGAGGTG GCTATCCAAGGCAAAGCTAGAAGGGGCTTGGGTCAGAATAGGAAAAGAAAGTTGCCTCAGGATGAAGATTCAAGATCTCCAGAGATGAGATCTACCAGTA AAGTGTGTAAAGAAGTTAGGAACTCAAAGAGAGATGGGGAAACAGCTGAACTCAGTGGGGGTTCTGAATCAGAAGAAGATGCATTCGGAAGAATGGGTTT ACAAACTGGCATGAAGAGTCAGTGGGCCAAAAACAAAGTTGACAGAAGTCTTGTTGTAAGCAAGAAGAAAAACAAAAAGGCACTGAGTTTTGATGAATGT TTGTTCTCAGAGCTGTCACCAGAAAAGGCGCCAATTGAAATCGGGGAGAAAATTTCACCAGAAAAGGCCACTGCTGTTGATGATGTTTTGACCAAATCAG TACACAATGCATTTACAGGCAGAGAGATGGACTTTTTCCCTTTGCATTCTTCACAAATGGAGAAAAATGTTAATGATTACAAGAAGAAAGGAAAGATGCC TCTTTTTGAGGATTATCAGGTTTCCCCGTCTCCTTGGAATCATGGCATTCTCAGAGAAGGTCCAGTGATTAGGAAAGATGTGGGGACAATACATGCTGGA CTTGTACCTGTTCCGTTTCATTCAGCAGAGGACACATATCTTGAAAAGGGGCTGGATCTTTCTCTTAACAGCTACAAGACAGCACAAAGCTATGATGGGA AACATATTCCACTGGTAGAAAATAGGCAAAGTTCTTTATTTACTTGGCAAGAGGGAAGTTCCAAAAATCAGGCAATGAGGAAAGCTACAGAAATTGAGCA TGTGGGAAATTTCAATTTCACTTCTAAAATTGCCCAAGATGCACCTTTTGAGAAAGGAATACGTAGCGATCCCAGTACCAAGAGACCATCTTTTAAAATT CCCTTCCTCAGTGAGAAGCAGAAATACAACTTTCAGGTTGAAATTGGGGGTTGTTCTCTCATGCAGAAAAAGGACTTTTGTAATACCAAAAGCAACGAGA AAACCATTGGAATGCAGGAACATTCAGCATTTCCAAGGAAAGATATCAACCAAAGAGCTGATAAGTTGTCTGAACAGGGAGCTTTAGATGACATTCCAAT GGAAATTGTTGAACTCATGGCAAAGAATCAGTATGAGAGGTGTCTTCCTGATGGTGAATATGAGAAACGCCAGTTAGAAACAACTAGTAGCTCAAGGAGG AGTCAGATGATGAATTTCAGTCAAGTATATGGGCTTGGAGGGTTAAGCTTATTTCATCAGGAAACTACTCAAAAACAGAACCCTCCAGCCAGAAGAAATG GCATAATAAAGATGGGTGAAATGGAAGAATCAACCAAACAGAAGGCAGTTGATTTCTTCTCTCAAGCTGATCGAAACTCATTCAATATGAGGCGACTGGA AAAAACTGGTTCCCCTGTGGGGTTTGGACCATTTCTTCAACATCAAGAGAAGCCATCCAGCAGAGTTCAACATTCTGCTTGCATTTCTAACGTCCAAAAC ATTTCTCAAAATTGCAAACAGATAGGGGATGTGGTGGGGAATAGATCTTGTTATGCCAATTTCCACACCCCAGGACCATGTAACACATGCCAGAGCATTC CACAGCAAAGTAAGGAAGCAAATCACCTTTGGTCATCAATGATGTCGAATCACATGCCTTTTGTTTATACCATTCCTCCAAAGTGTGTAACTCAATCTAC CAATGTAAATGTGTTTCCTCATTCTTCTGGAAGTAACCTCAAGGAAAATATGAATGGGGATCGTGAGCTGAAGTTTTTGAATAAGAATGCTGCCAACCTG GGAAAGCAAAACAGGAATTTTGGTTCAGAAACTCTCATCAGGGCACGTTCAGAATACCCCTTTGCTGGAAAACATAATGGGATTGAGCTTAATCAGAAGC CAATAGGGTCATTAGATCTGTATTCTAATGAAACCATACCAGCTATGCACTTGCTCAGCCTCATGGATGCAGGAGTACAGTCCAGTGCACCCATCAATAT GGATGTAAACTCAAAGTTCCTCAAGAGACCTTCCATTACACACAATCCTGAACCTAAGGAGTTTTCTAGGCTGGACACCGGGGCATTTAAAGCTGTTAAT ACTGTGAAGCACCCACCTCCTAATCATCATGGTAAAAATCAACTTGCAGAGAATTTCCGTGATCATATTCCTGTCATTCAAACAACAGCTGGTGCATCTT CTTCGTCAATTCTACATGATAAAGGTATTAGGAAGGCTACTGATTTTCCCATTCAAGTTGTTCAAGATAAAGATAAGAGAAAAGGCTCTGATTCACGCAC ACAGAATAAAGTAAATAGATCACAAAAATCAGCATATGGTGGTTTTGGCACCAACTGTGGATCCATTCCCGCTCATAACATGCAGACAATGTTTTATGGT GCTTCAGATTCTTCAATGTTTCCTTTGCCATTCCGTGCATTGGAAAAGCCAAACAAACACAAGTTGGAGTCCCCTGCTAACAATAGAACTGTTCACGCCC ATAAAAGCAGTTCTGAGACTGAAGTTTGCAGCGTGAACAGAAACCCTGCTGATTTTACCGTACCGGAAGCTGGAAATATGTATATGATTGTAGGTGAAGA CCTAAAATTTGAAAAGGAAGTTCCTTTTGTAAACGGATCTCGCTCACTTAAATTGGATGGGCCCAAACGACAGAGGAAGCTTCCTGCTGTGAAAGGCCGT GGACGACCTCCAATGTCACGATTGTCCTAA
AA sequence Show only first row Show all	>Potri.006G240500.8 pacid=42768375 polypeptide=Potri.006G240500.8.p locus=Potri.006G240500 ID=Potri.006G240500.8.v4.1 annot-version=v4.1 MERTMLVEKNHPGSHSKLVSKVESSIRIDSITIDLDNVDEKVEAEKCSHFSMRGYVSEIRKRDWKICWPFVSDGDSNNYEEQACLLPPLHVPKFRFWRCQ NCVWEVDATANCYGSTALKSCSTGFKSTKVCSHAPILGDDAMLPSDVQGAANQEIPEGTQADAFASLTNTSKCHHSQSIDKNERKTKDENVSNIGKSVGS EDNLKQENHRLACVATEVVSSPIQKTDLTDKIAAFKSKCINLCEPGCGHHEVVAAEFARNLNCMVNNATEICEAGKETSIDDQYKEIITRGASGEAGNID DGALTADKDPVSRPSLELDEYDDPSSESTDIMVGNNSQDVHHENSSGLHRRKTRKVRLLTELLCENGDGDTDNQTQYSLPHAFPDASAGVDKVPVLQGEV AIQGKARRGLGQNRKRKLPQDEDSRSPEMRSTSKVCKEVRNSKRDGETAELSGGSESEEDAFGRMGLQTGMKSQWAKNKVDRSLVVSKKKNKKALSFDEC LFSELSPEKAPIEIGEKISPEKATAVDDVLTKSVHNAFTGREMDFFPLHSSQMEKNVNDYKKKGKMPLFEDYQVSPSPWNHGILREGPVIRKDVGTIHAG LVPVPFHSAEDTYLEKGLDLSLNSYKTAQSYDGKHIPLVENRQSSLFTWQEGSSKNQAMRKATEIEHVGNFNFTSKIAQDAPFEKGIRSDPSTKRPSFKI PFLSEKQKYNFQVEIGGCSLMQKKDFCNTKSNEKTIGMQEHSAFPRKDINQRADKLSEQGALDDIPMEIVELMAKNQYERCLPDGEYEKRQLETTSSSRR SQMMNFSQVYGLGGLSLFHQETTQKQNPPARRNGIIKMGEMEESTKQKAVDFFSQADRNSFNMRRLEKTGSPVGFGPFLQHQEKPSSRVQHSACISNVQN ISQNCKQIGDVVGNRSCYANFHTPGPCNTCQSIPQQSKEANHLWSSMMSNHMPFVYTIPPKCVTQSTNVNVFPHSSGSNLKENMNGDRELKFLNKNAANL GKQNRNFGSETLIRARSEYPFAGKHNGIELNQKPIGSLDLYSNETIPAMHLLSLMDAGVQSSAPINMDVNSKFLKRPSITHNPEPKEFSRLDTGAFKAVN TVKHPPPNHHGKNQLAENFRDHIPVIQTTAGASSSSILHDKGIRKATDFPIQVVQDKDKRKGSDSRTQNKVNRSQKSAYGGFGTNCGSIPAHNMQTMFYG ASDSSMFPLPFRALEKPNKHKLESPANNRTVHAHKSSSETEVCSVNRNPADFTVPEAGNMYMIVGEDLKFEKEVPFVNGSRSLKLDGPKRQRKLPAVKGR GRPPMSRLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.006G240500 [exp]	0	1
AT4G01290			unknown protein		Potri.002G163000 [exp]	4.00	0.8659
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	11.53	0.8250
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	13.19	0.8472
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	16.70	0.8397	CPC902,TTN8.3
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	17.32	0.8390
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	25.88	0.8366
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	26.68	0.8220
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	27.65	0.8079
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	28.26	0.8044
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	29.59	0.8329

Compare expression of checked genes

Potri.006G240500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.