Plant FIBer expression Database

Potri.006G240600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25770 496 / 3e-176 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011694
[exp]
558 / 0 AT5G25770 486 / 9e-172 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Lus10009496
[exp]
132 / 1e-37 AT5G25770 108 / 7e-30 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Lus10009497
[exp]
67 / 1e-13 AT5G25770 64 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12695 Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.006G240600.1 pacid=42767650 polypeptide=Potri.006G240600.1.p locus=Potri.006G240600 ID=Potri.006G240600.1.v4.1 annot-version=v4.1
ATGCTCCTATTAATGGCGCTGTTTCCAGCATCACATCTCTTATTACACGGGACCCACATCTCGCACGTGCAAAGCCCAAAACTCCACTCGTGTGGACTCA
GCTCCCCTTGTTTAAGAACATACCCGCCAAAACAACAAGAAGAAACTGCCTATAAGTACCAGACCCAAGCCCGGATTGTGAGAAAAGCAAAGAGTGAGGT
CAAGATGGAAAAGGAAGAAGCTGGTCTTGTTGTTGATGCTGAGAAGCTGAGATTTGAATTCCTTCAAGTCTTGCGTGGCAGAAGAACTGCTGAAGTTCCG
TTGACTGTGGAACCTGCAAACCCAGTGAAGCATCCCCTGTTTCAAGAGACTCCACGGCCAACATTCAGTGAGGCAATGGAGTCTTGTCCGAAAGTAGAGA
TCAAAAATTTCAATAGTCTACTCAAAGAGGAGAATCTTTATTTGACTACTGAGGCAGGGGAGCAAGGGCGTTTGCCTGTCCTGATTCTGAGTATGAAAGG
GAGTGAAGAAAGAAGGCCAGCTATTGTATTTCTGCATAGCACACATAAGAATAAAGAGTGGTTACGACCATTGCTCGAGGCATATGCTTCGCGGGGATAT
GTTGCAATTGCGATTGACTCTCGCTACCATGGGGAACGAGCCAGCAATTTGACTACCTATAGAGATGCTCTAATATCATCATGGAAAAACAGTGATACAA
TGCCATTCATATTTGACACGGTCTGGGACTTGATAAAACTGGCTGATTATCTTACTCAGAGGGAGGATATAGATCCTACAAGGATAGGAATTACTGGAGA
ATCGTTGGGAGGAATGCATGCTTGGTTTGGTGCTGCTGTTGACACCCGATATTCAGTGGTGGTCCCAATAATTGGTGTGCAGGGGTTTTGTTGGGCCATA
GACCATGATAAGTGGCAAGCTCGAGTTGACAGTATAAAGCCTGTATTTGAAGAAGCGCGGAAAGATCTAGGCAAGAGTGCAATTGATAAAGAAGTGGTGG
AGAAGGTCTGGAATAGGATTGCACCTGGTCTGGCTTCTTGCTTTGATTCGCCATATACAGTTCCAGCCGTTACACCAAGACCTATGCTGATTGTTAATGG
TGCAGAAGATCCTCGATGCTCACTCGCAGGTTTGGAAGTTCCCAAATCAAGAGCAATTAAGGCTTATGGAGAAGCACACTCTCTAGATAAATTTAAGCTG
GTTGCTGAACCTGGAATTGGACATCGAATGACGCCATTCATGGTAAAAGAAGCAAGTGATTGGTTTGACAAGTACCTTAAGCAACAAGCTGCTTAG
AA sequence
>Potri.006G240600.1 pacid=42767650 polypeptide=Potri.006G240600.1.p locus=Potri.006G240600 ID=Potri.006G240600.1.v4.1 annot-version=v4.1
MLLLMALFPASHLLLHGTHISHVQSPKLHSCGLSSPCLRTYPPKQQEETAYKYQTQARIVRKAKSEVKMEKEEAGLVVDAEKLRFEFLQVLRGRRTAEVP
LTVEPANPVKHPLFQETPRPTFSEAMESCPKVEIKNFNSLLKEENLYLTTEAGEQGRLPVLILSMKGSEERRPAIVFLHSTHKNKEWLRPLLEAYASRGY
VAIAIDSRYHGERASNLTTYRDALISSWKNSDTMPFIFDTVWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWFGAAVDTRYSVVVPIIGVQGFCWAI
DHDKWQARVDSIKPVFEEARKDLGKSAIDKEVVEKVWNRIAPGLASCFDSPYTVPAVTPRPMLIVNGAEDPRCSLAGLEVPKSRAIKAYGEAHSLDKFKL
VAEPGIGHRMTPFMVKEASDWFDKYLKQQAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25770 alpha/beta-Hydrolases superfam... Potri.006G240600
[exp]
0 1
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.005G253400
[exp]
2.00 0.7447
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.002G007800
[exp]
3.87 0.7074
AT3G52190 AtPHF1, PHF1 phosphate transporter traffic ... Potri.010G232400
[exp]
4.58 0.6806
AT4G34640 ERG9, SQS1 squalene synthase 1 (.1) Potri.004G161200
[exp]
4.69 0.6664
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.003G081800
[exp]
4.89 0.7247 RAB1.6
AT1G27000 Protein of unknown function (D... Potri.010G092700
[exp]
7.74 0.7090
AT3G10640 VPS60.1 SNF7 family protein (.1.2) Potri.008G018300
[exp]
11.66 0.6769
AT2G20900 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.... Potri.013G148500
[exp]
12.48 0.6236
AT3G02520 GENERALREGULATO... general regulatory factor 7 (.... Potri.004G101700
[exp]
13.41 0.6702
AT5G49810 MMT methionine S-methyltransferase... Potri.004G229800
[exp]
22.18 0.5945 Pt-MMT.1,MMT

Potri.006G240600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.