Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32760 630 / 0 ENTH/VHS/GAT family protein (.1.2) AT3G08790 475 / 9e-161 ENTH/VHS/GAT family protein (.1) AT1G21380 310 / 4e-98 Target of Myb protein 1 (.1) AT1G76970 297 / 5e-94 Target of Myb protein 1 (.1) AT5G01760 238 / 2e-70 ENTH/VHS/GAT family protein (.1) AT2G38410 229 / 1e-65 ENTH/VHS/GAT family protein (.1) AT5G63640 188 / 7e-53 ENTH/VHS/GAT family protein (.1) AT5G16880 127 / 2e-31 Target of Myb protein 1 (.1.2.3) AT1G06210 84 / 4e-17 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039100 [exp] 1042 / 0 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 326 / 4e-104 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 325 / 2e-103 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.006G106500 [exp] 271 / 8e-82 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G131900 [exp] 270 / 9e-81 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 187 / 1e-52 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 187 / 1e-52 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 173 / 1e-47 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 137 / 6e-35 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022140 [exp] 686 / 0 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10011689 [exp] 492 / 2e-166 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10029739 [exp] 303 / 3e-95 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10018948 [exp] 300 / 3e-95 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 307 / 4e-94 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10042770 [exp] 298 / 2e-93 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10025264 [exp] 274 / 3e-82 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 268 / 1e-80 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 265 / 2e-79 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 183 / 7e-51 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.006G241000.1 pacid=42768379 polypeptide=Potri.006G241000.1.p locus=Potri.006G241000 ID=Potri.006G241000.1.v4.1 annot-version=v4.1 ATGGTGAATTCTATGGTGGAAAGAGCCACGAGCGACATGCTGATCGGGCCTGATTGGGCTATGAATATCGAGATCTGTGATATGTGCAATCGCGACCCTA CGCAAGCGAAGGATGTTATCAAAGGAATAAAGAAGAAACTTGGTAGCAGGAATTCAAAAGTTCAACTACTTGCCCTAACACTGTTAGAGACAATCATAAA GAACTGTGGGGACATTGTACATATGCATGTGGCAGAGAAAGATCTTCTTCATGAGATGGTCAAAATAGCTAAGAAAAAGCAGCCTGACTTTCATGTCAAA GAGAAGATATTGATTCTGGTAGATACTTGGCAAGAAGCTTTTGGTGGTCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAAGAGTTGCTGCGTG CTGGGGCAGTGTTCCCTCCAAGGTCTGAGAGCTCCGCACCTGTATTCACACCTCCACAAACACAGCCTCTGTCATCTTATCCTCAAAATCTGCGCAGTAT TGAGTATCCACAAGGAGCGGCTGAATCTTCTGCAGAGTCAGAGTTCCCAACATTGAGCATGACAGAAATTCAAAATGCTCGGGGTATCATGGATGTTCTA GCAGAGATGCTAAATGCATTAGACCCAGGGAACAGAGAGGGGCTTAGGCAGGAGGTTATAGTTGACCTAGTGGAACAATGTCGTACATACAAGCAAAGAG TGGTTCATCTTGTTAATTCTACTTCGGACGAATCCCTACTTTGTCAAGGATTAGCATTGAATGATGACTTGCAGCGAGTTTTAGTCAGGCATGAATCCAT TTCTTCAGGAACTTCTGCCCCAGGTCTGGCAGAAAAACCAAAAGCTGAATCTAGTGGAGCACTTGTAGACATTGATGCTCCTCTAGTTGATGCTGGAGAT AATAAGGACAAAAAGCCTGATGGGGGATCAACTTCAAATTCTCAAACACTAAACCAGTTGTTACTCCCTGCACCTCCTGCAACTAATGGTCCAACTACTC TAGCAGCAGCCAATCCCAAATTGGACCTGTTAAGTGGTGATGATTATAACTCACCAAAGGCTGGAACCTCTCTGGCTCTTGTTCCTGTAGGAGAACCACA GACGTCCACCCCTCTGTCACAGCAGAATGCACTTGTTCTGTTTGACATGTTTTCTGATAGTAACAACGCTCCAAATACAGCCAATACACAGCCCACCAAT CTGGCAGGACCAACCAATTCCTTGACTCCACCATTCCAACAGCAACAGAATTTTCAAACACCAGAAGCTGGTGTTTACCTGAATGGAAATGCCCCGAATA CAGGATCACCACGATATGAGCAGTCAGTATACATGCAAGGCACTAGTCCTGCCTGGAATGGACAGCTTCCCCAGCAGCAACAGCAGCCAGCCTCACCAGT TTATGGTGCTCAAAGTAGTGGAGCACTGCCTCCACCCCCCTGGGAAGCTCAGCAAGCAGACACAAGTCCAGTGGCAGGCGCTCAATACCCTCAATCAATG CAAGCTACTCAGATGGTTGGCATGCATTCACAACCACTGCCTAGTGGTATGTACCCTCATGGCCCTCAGCCAGTGGGTAATGAACATGTGGGTATGTACA TGCAGACTGCACCGAGCAATCAGTTTTTAGGCATGAATCCTCAAGCAATGCAGGGAGGGCAGTACATGGGTATGTATCCACAACCAATGCAAGCTGGGCC GATGGCTTCAATGTATCCTCAGCAAGTGTATGGCAACCAAATGGCTGGATATGGGTATGGACCGCAGCAAGGGACACAGTACCTTGATCAGCGAATGCAT GGACTGTCTGTTAGAGACGACAATGGCTTGAGAAACTCATCTTACCAGGTTCCAACTTCTTCCTATGTGCCATCTGGTAAGCCTTCCAAGCCAGAGGACA AGCTATTTGGAGACCTAGTAGATATTTCAAAATTCAAGCCAGGAAAATCCACTCCTGGGAGAGCTGGTAGCATGTGA
AA sequence Show only first row Show all	>Potri.006G241000.1 pacid=42768379 polypeptide=Potri.006G241000.1.p locus=Potri.006G241000 ID=Potri.006G241000.1.v4.1 annot-version=v4.1 MVNSMVERATSDMLIGPDWAMNIEICDMCNRDPTQAKDVIKGIKKKLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIAKKKQPDFHVK EKILILVDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPPRSESSAPVFTPPQTQPLSSYPQNLRSIEYPQGAAESSAESEFPTLSMTEIQNARGIMDVL AEMLNALDPGNREGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLVRHESISSGTSAPGLAEKPKAESSGALVDIDAPLVDAGD NKDKKPDGGSTSNSQTLNQLLLPAPPATNGPTTLAAANPKLDLLSGDDYNSPKAGTSLALVPVGEPQTSTPLSQQNALVLFDMFSDSNNAPNTANTQPTN LAGPTNSLTPPFQQQQNFQTPEAGVYLNGNAPNTGSPRYEQSVYMQGTSPAWNGQLPQQQQQPASPVYGAQSSGALPPPPWEAQQADTSPVAGAQYPQSM QATQMVGMHSQPLPSGMYPHGPQPVGNEHVGMYMQTAPSNQFLGMNPQAMQGGQYMGMYPQPMQAGPMASMYPQQVYGNQMAGYGYGPQQGTQYLDQRMH GLSVRDDNGLRNSSYQVPTSSYVPSGKPSKPEDKLFGDLVDISKFKPGKSTPGRAGSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	1.73	0.7722	SNF4.3
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.009G017300 [exp]	3.74	0.6694
AT4G28300			Protein of unknown function (D...		Potri.019G095400 [exp]	9.16	0.7030
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.006G065600 [exp]	9.16	0.6404
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	16.91	0.6661
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	20.71	0.6044
					Potri.013G144251 [exp]	20.97	0.5965
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	23.40	0.6830
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	24.00	0.6694
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	29.73	0.6500

Compare expression of checked genes

Potri.006G241000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.