Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25757 903 / 0 RNA polymerase I-associated factor PAF67 (.1) AT5G25754 903 / 0 RNA polymerase I-associated factor PAF67 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038500 [exp] 1021 / 0 AT5G25757 879 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038622 [exp] 996 / 0 AT5G25757 890 / 0.0 RNA polymerase I-associated factor PAF67 (.1) Lus10037897 [exp] 990 / 0 AT5G25757 884 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF10255 [poplar] [flax] Paf67 RNA polymerase I-associated factor PAF67
Representative CDS sequence Show only first row Show all	>Potri.006G241300.1 pacid=42767696 polypeptide=Potri.006G241300.1.p locus=Potri.006G241300 ID=Potri.006G241300.1.v4.1 annot-version=v4.1 ATGGCAGCATCGTACGACTACGAAGACGCTCCTAGCAGACACGATGAAGAAACTGGTCCACAAGGTTACGACCCAAACTTCGTCCCGGACTCCGTCAAGT CCTTCGTAACACACTTATACAGACACATACGAGAGAAAAATGTGTACGAGATTCACCAGATGTATGAAACCTCTTTCCAAACTCTCTCCGACCATCTCTT CAAAGACACTCCTTGGCCTTCAGTCGACGCGGTCGCAAATTATGTCGACAATGATCATGTTTTTTGCTTGCTTTATCGTGAGATGTGGTTTAGGCATCTG TATGCAAGACTTTCGCCTACTCTTAAACAGCGGATTGATAGTTGGGATAATTATTGTGGTCTTTTTCAGGTGGTGTTGCATGGAGTGGTGAACATGCAAT TGCCGAATCAGTGGTTATGGGATATGGTGGATGAGTTTGTTTATCAGTTTCAGAGTTTTTGTCAGTATAGAGCTAAGATGAAGAACAAGACTGAGCAAGA GATTGCCCTTTTGAGGCAATTTGATCCGGCTTGGAATGTGTATGGAGTGCTGAACTTCTTGCAAGCACTGGTGGAGAAGTCGAGTATCATTCAGATACTG GAGCAGGAGAAGGAAGGTATTGAACAATTCACTGCTACTGATGGGTATGATTATAGTGGTGGCAGTAATGTCTTGAAGGTTTTGGGGTATTTCAGTATGG TTGGTTTGCTGCGAGTTCATTGCCTCCTGGGTGACTATCATACTGGCCTGAAGTGCTTGCTTCCCATTGACATTAGTCAACAGGGTGTCTATACCAGTGT CATAGGAAGCCACATTGCTACAATATACCATTATGGTTTTGCCAATCTTATGTTGAGGAGGTATGTGGATGCTATTCGTGAATTCAATAAAATTCTCCTG TACATATACAAGACTAAGCAGTATCATCAGAAATCTCCACAGTATGAGCAGATATTAAAGAAGAATGAGCAGATGTATGCTTTGCTGGCAATTTGTCTGT CACTTTGCCCACAAGTGAAGCTTGTGGATGAGACAGTCAATGCACAATTAAGGGAGAAGTATGGTGAAAAGATGGCTAGAATGCAAAGATATGATGATGA GGCATTTTCTCTCTACGATGAACTCTTCTCTTATGCATGCCCTAAGTTCATTACACCCTCAGCTCCAAGTTTTGAAGAACCACTTGTAAACTACAACCAG GATGCTTACAGACTGCAACTGAAACTGTTTCTTTACGAAGTAAAACAGCAACAATTGTTGTCAGGTGTTCGAACCTTCCTAAAAGTGTATTCTACTATAT CCCTTGGGAAGCTTGCGAATTACATGGAAGTGGATGAACCTACTTTAAGGACTATCCTGATGACATACAAGCACAAGACTCATGCTGTTGATTCCGAGGG AAAGATTATATCTAATGCTGATGTGGATTTCTACATCGATGAGGACATGATTCATGTTGTTGACACCAAACCAGTGAAGCGATATGGTGATTACTTTTTG CGGCAAATTGTCAAGTTTGAAGGGGTGATAAATGACATGGATCGGATAAAGCTGGAATGA
AA sequence Show only first row Show all	>Potri.006G241300.1 pacid=42767696 polypeptide=Potri.006G241300.1.p locus=Potri.006G241300 ID=Potri.006G241300.1.v4.1 annot-version=v4.1 MAASYDYEDAPSRHDEETGPQGYDPNFVPDSVKSFVTHLYRHIREKNVYEIHQMYETSFQTLSDHLFKDTPWPSVDAVANYVDNDHVFCLLYREMWFRHL YARLSPTLKQRIDSWDNYCGLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDPAWNVYGVLNFLQALVEKSSIIQIL EQEKEGIEQFTATDGYDYSGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVYTSVIGSHIATIYHYGFANLMLRRYVDAIREFNKILL YIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKLVDETVNAQLREKYGEKMARMQRYDDEAFSLYDELFSYACPKFITPSAPSFEEPLVNYNQ DAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSTISLGKLANYMEVDEPTLRTILMTYKHKTHAVDSEGKIISNADVDFYIDEDMIHVVDTKPVKRYGDYFL RQIVKFEGVINDMDRIKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	0	1
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.006G166000 [exp]	2.44	0.9199
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	5.47	0.9099
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.006G047600 [exp]	5.47	0.9165	EIF3.4
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	7.48	0.8855	Pt-CPN60.2
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.001G129100 [exp]	7.93	0.8961	EIF2.5
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	8.77	0.9095
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	8.83	0.9138
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	9.16	0.9128
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.018G015200 [exp]	9.16	0.8668	EIF3.5
AT1G15250			Zinc-binding ribosomal protein...		Potri.006G243300 [exp]	9.79	0.9163

Compare expression of checked genes

Potri.006G241300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.