Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3) AT2G20230 64 / 8e-12 Tetraspanin family protein (.1) AT4G28770 57 / 2e-09 Tetraspanin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038400 [exp] 309 / 2e-107 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 83 / 3e-19 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 82 / 5e-19 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 80 / 6e-18 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 78 / 3e-17 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.002G253500 [exp] 59 / 3e-10 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039817 [exp] 93 / 1e-22 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 88 / 5e-21 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10011910 [exp] 59 / 5e-10 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10022841 [exp] 56 / 4e-09 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10030939 [exp] 45 / 3e-05 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.006G241400.1 pacid=42770471 polypeptide=Potri.006G241400.1.p locus=Potri.006G241400 ID=Potri.006G241400.1.v4.1 annot-version=v4.1 ATGACAAAGTGTGCAAGGTGTTGCTTGCGCAACTCAATCAGGATAGTCAACCTGATGATGCTCTTGTGTGGGACTGGAATCATCATATATTCACTTTGGC TGGAAAAGAAATGGGATCAAGGTATTGCTAAGTTCCCTCATAGGCAATCTCCTCTAGCACCATGGTTTATATTCACATTTTTAGGAGTGGGAATTGTTGT CTGCTTAAGCACTGTCGGTGGTCATATTATAGCTAATCGCATCAGCAATTCTACTCTCCTTTTCTACATTGTTACCATCTGCTGCCTTCTTTCCCTTGAG GCGACCGTGGTCTTCGCGATTTTCTTCAAGACGGACTGGGGAAAGAAAATTTCTGCATACACGGGCGAAAAAAACACATACTTTGAGATGTTTATATTGA CCCATGTAAAGATAAGCCGTGCAATCACGATCTTGATTTTGGTGGCTCAGAGCAGTGTCGTTATACTTGCTGCCATTCTTTGGGCAGTAGGTAGCGAGCC AAGAACTGACTTTCTGGAGGTGGATACCTCGGTTTTTATTCAATCCTTTCTGGTGCCAGCAGAATCACCTGGATTTGCAGAGAGACCAGGACATACTTGC AGAAGATGTGGGACCAGTTTACCTCTAGGAGGAGGAAATGCACTAAGAAGCCTTTTGTCACGTTTTAAGAGCTTACTCAGAAGGAGATTTCAGAGAACAT ACACTGTTTATTAA
AA sequence Show only first row Show all	>Potri.006G241400.1 pacid=42770471 polypeptide=Potri.006G241400.1.p locus=Potri.006G241400 ID=Potri.006G241400.1.v4.1 annot-version=v4.1 MTKCARCCLRNSIRIVNLMMLLCGTGIIIYSLWLEKKWDQGIAKFPHRQSPLAPWFIFTFLGVGIVVCLSTVGGHIIANRISNSTLLFYIVTICCLLSLE ATVVFAIFFKTDWGKKISAYTGEKNTYFEMFILTHVKISRAITILILVAQSSVVILAAILWAVGSEPRTDFLEVDTSVFIQSFLVPAESPGFAERPGHTC RRCGTSLPLGGGNALRSLLSRFKSLLRRRFQRTYTVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	0	1
					Potri.013G069675 [exp]	1.41	0.9235
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	1.73	0.9373
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.017G093200 [exp]	4.89	0.8987
					Potri.003G054001 [exp]	6.48	0.9076
AT5G45920			SGNH hydrolase-type esterase s...		Potri.004G053800 [exp]	6.48	0.8918
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	9.48	0.9175
AT5G36160			Tyrosine transaminase family p...		Potri.017G013800 [exp]	11.40	0.9081
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	12.84	0.8905	Pt-ATMRP14.3
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	19.36	0.8614
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102700 [exp]	21.63	0.8973	Pt-GLR3.5

Compare expression of checked genes

Potri.006G241400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.