Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AAT.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11520 769 / 0 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT5G19550 720 / 0 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT1G62800 642 / 0 ASP4 aspartate aminotransferase 4 (.1.2) AT4G31990 466 / 1e-162 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT2G30970 427 / 1e-147 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082500 [exp] 748 / 0 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241500 [exp] 664 / 0 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G260200 [exp] 482 / 1e-168 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 478 / 3e-167 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.014G143300 [exp] 411 / 2e-141 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 385 / 3e-131 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.005G115800 [exp] 44 / 0.0001 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.007G013200 [exp] 43 / 0.0004 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022137 [exp] 775 / 0 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10043222 [exp] 732 / 0 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 728 / 0 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 478 / 4e-167 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10020720 [exp] 421 / 5e-145 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 419 / 3e-144 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 345 / 2e-115 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 328 / 6e-109 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 204 / 3e-61 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10020959 [exp] 43 / 0.0004 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.006G241600.1 pacid=42767873 polypeptide=Potri.006G241600.1.p locus=Potri.006G241600 ID=Potri.006G241600.1.v4.1 annot-version=v4.1 ATGAACCCAGAATTGACATCACCATCTTCTTCTAGTGATCGCAGAATTAGCGTATTAGCAAGACACCTTGTTGGTGTTGAAATGGACCCTCAGAACGACA GCATTTCGGCTTTTCCTACTTCAGGTTCTGACAGCAACTCTGTTTTCTCCCACGTTGTTCGCGGTCCTGAAGACCCCATCCTCGGTGTGACTGTTGCTTA TAACAAAGATCCCAGTCCTGTTAAGCTCAATTTGGGTGTTGGCGCTTATAGAACTGAAGAAGGAAAGCCTCTTGTTTTGAATGTAGTGAGAAAAGCTGAG CAGCTGCTTGTTAATGACAGGTCGCGAGTTAAGGAGTATCTTCCTATTACTGGATTGGCAGAATTCAATAAATTGAGTGCTAAGCTTATGTTTGGTGCCA ACTGCCCTGCAATTCAAGAGAACAGGGTTACAACAGTTCAATGCTTGTCTGGCACTGGTTCATTGCGTGTTGGAGCTGAATTTCTGGCAAAACACCATCA TCAACGGACAATATACATTCCCCAGCCAACATGGGGAAACCACCCTAAAATTTTCACTTTGGCAGGGTTATCTGTCAAAACTTACCGCTATTATGATCCA GCAACACGTGGGCTGAATTTCCAAGGCCTCGTGGAAGACCTTAATTCTGCCCCATCTGGAGCTATTGTTCTTCTTCATGCCTGTGCTCATAACCCCACGG GCGTTGATCCAACTTCTCAGCAGTGGGAGCAGATCAGGAAGTTGATGAGGTCAAAAGGGTTGATGCCTTTCTTTGATAGTGCTTATCAGGGTTTTGCAAG CGGAAGTCTGGATGCTGATGCACAGCCTGTTCGCATGTTTGTTGCTGATGGCGGTGAACTTCTTCTAGCTCAGAGTTATGCAAAGAACATGGGGCTATAT GGGGAGCGCATTGGTGCTTTGAGCATTGTTTGCAAGACAGCTGATGTTGCAGGCAGGGTTGAAAGCCAGTTGAAACTTGTGATTAGACCCATGTATTCAA ACCCACCTATTCATGGTGCATCTATTGTGGCTGCTATTCTAAAGGACAGGGATTTGTACAATGAGTGGACCATCGAGTTGAAGGCTATGGCTGACCGTAT AATCAGCATGCGCCAGAAACTCTTTGAAGCCTTGCATGCTAGAGGGACACCCGGTGACTGGAGTCACATTGTTAAACAAATTGGAATGTTTACATTCACT GGACTGAACTCTAAGCAAGTTGCTTTCATGACTAAAGAGTACCACATCTACATGACATCAGATGGGCGGATTAGCATGGCTGGTTTGAGCTCAAAGACAG TCCCTCATCTTGCAGATGCTATGCATGCAGCTGTTAAGCGAGTTGTGTAG
AA sequence Show only first row Show all	>Potri.006G241600.1 pacid=42767873 polypeptide=Potri.006G241600.1.p locus=Potri.006G241600 ID=Potri.006G241600.1.v4.1 annot-version=v4.1 MNPELTSPSSSSDRRISVLARHLVGVEMDPQNDSISAFPTSGSDSNSVFSHVVRGPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAE QLLVNDRSRVKEYLPITGLAEFNKLSAKLMFGANCPAIQENRVTTVQCLSGTGSLRVGAEFLAKHHHQRTIYIPQPTWGNHPKIFTLAGLSVKTYRYYDP ATRGLNFQGLVEDLNSAPSGAIVLLHACAHNPTGVDPTSQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDADAQPVRMFVADGGELLLAQSYAKNMGLY GERIGALSIVCKTADVAGRVESQLKLVIRPMYSNPPIHGASIVAAILKDRDLYNEWTIELKAMADRIISMRQKLFEALHARGTPGDWSHIVKQIGMFTFT GLNSKQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAMHAAVKRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	0	1	AAT.2
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051900 [exp]	4.69	0.8893
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	7.74	0.9249
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	21.21	0.9251
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	28.56	0.9116
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	29.39	0.8984	ZOG1.17
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Potri.009G011700 [exp]	32.93	0.8468	IVD.1
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	33.46	0.9142
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	34.49	0.9082
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	37.48	0.9118
AT5G14780		FDH	formate dehydrogenase (.1)		Potri.014G161300 [exp]	45.69	0.9082	FDH1

Compare expression of checked genes

Potri.006G241600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.