Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32720 403 / 2e-138 ATLA1 La protein 1 (.1.2) AT1G79880 252 / 2e-79 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT5G46250 75 / 2e-14 RNA-binding protein (.1.2.3) AT2G43970 66 / 2e-11 RNA-binding protein (.1.2) AT3G19090 55 / 6e-08 RNA-binding protein (.1) AT5G21160 44 / 0.0002 LA RNA-binding protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037900 [exp] 697 / 0 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.017G007400 [exp] 68 / 5e-12 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 66 / 2e-11 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.007G144800 [exp] 62 / 3e-10 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.009G106500 [exp] 59 / 3e-09 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.004G144700 [exp] 54 / 2e-07 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.005G109400 [exp] 48 / 1e-05 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 47 / 3e-05 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022135 [exp] 399 / 9e-136 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 385 / 5e-129 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10038624 [exp] 377 / 9e-127 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10023315 [exp] 72 / 3e-13 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 69 / 1e-12 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10025608 [exp] 64 / 1e-10 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 63 / 2e-10 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 60 / 3e-09 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10041277 [exp] 44 / 0.0003 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain CL0221 [poplar] [flax] RRM PF08777 [poplar] [flax] RRM_3 RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.006G241800.1 pacid=42766881 polypeptide=Potri.006G241800.1.p locus=Potri.006G241800 ID=Potri.006G241800.1.v4.1 annot-version=v4.1 ATGGCAACTCCTTCTCTGGACGAAGAAACCACTAAGGAAGTCCTTAGACAGGTTGAATTTTACTTCAGTGACAGCAACATACCTCGTGATAATTTCTTGA GAAACACAATCGAATCTAGTGAAGATGGCTTGGTGAGTTTGGCTTTGATTTGTTCGTTTAAGAAGATGAAAGGTTACTTGAAATTAATGGACGTAAAGCC TGAAGAAATACCTGAACCTACTGTTCAGGCTGTGGCAGAAACGTTGAGAAAATCTACCTCTCTTAAAGTTTCTGAAGATGGTAAGAAAGTAGGCAGGATG GCAGCTCTATTGAAGCCGGATGAGGCTATAGAGCAATTAGATGTAAGAACAGTTGCTGTCTCACCGTTAAAATATAATGCGAAGCGGGAAGAGCTGGAGT CGTTTTTTGGTCAACATGCGAAGGTTACAAGTGTGAGGATGCCTCGTCATGTTGGTGACAAAAGGGTATTTTGTGGCACTGCTTTGATCGAGTTCTCATC AGAGGAAGATGCTGAAAAGATATTAAATCAAAGCTTGGTTTTTGAAGGTGCCGAGCTAGAATTAAAACCAAAGAAGGAATTTGATACAGAAAGAGCACAA GAAGAAGAGGAATTTGAAAATTCCCGTTCCTCAACAGGCCCCCATAACAAGAACAGTTCCAATGAAGAGGGCAACTACCCGAAGGGCTTAATTATTGCGT TTGCTTTAAAGAGTAAGCTAGCTGGAGGTTCTGCAGAACAAAATGGTGCACAGGAGCCTGCCAATGGTGATGCAAATGCCTGTGAAGCAGATGGAGGGTC AAGTTCATCAGAGAATACAACCAAAGAAAATGAACAGAAGGTGCCAGAAACTGTCAAGACTGATGATGAAAACAATGTGGATCATGTTGATGGGGACAAT GGCTCTGAAAGCACAGTAATAAAAACTGGAGAGGAGAAATCATCTGAAGATTCAAATGAAAAGGAGGAAGGGAAGGAAAAACCTAACCCAGCTGCTTCCA AGGATGACAAGAATGTTGTTCTGCGTGAAGATCTGAAGGCTGTCTTTGAAAGATTTGGCACTGTGAAGTATGTTGATTTCAAGATGGGAGATGAATCAGG ATACCTTCGATTTGAAGAAGCAGAAGCAGCTCAGAAAGCTCGAGCAGCTGCAGTACTGGCTAAAGAAGAGGGTCTGGTTGTGAAGAATTTCATTGCCACT TTAGAACCTGTGACTGGTGAGGCAGAAAAGGAATACTGGAACCAACTCCGTGGACAAAAAGAAAGGCGATTTGAAAATAAGGGCAACCGAGGAAGGGGTG GGAAACACTACAGGGGTGGTGGCAAACATCCCCGCTCTAGAGAAAACAATTATGGGAGACCAAATAAAGCTCAGAAAGTTGGAGCATCATGA
AA sequence Show only first row Show all	>Potri.006G241800.1 pacid=42766881 polypeptide=Potri.006G241800.1.p locus=Potri.006G241800 ID=Potri.006G241800.1.v4.1 annot-version=v4.1 MATPSLDEETTKEVLRQVEFYFSDSNIPRDNFLRNTIESSEDGLVSLALICSFKKMKGYLKLMDVKPEEIPEPTVQAVAETLRKSTSLKVSEDGKKVGRM AALLKPDEAIEQLDVRTVAVSPLKYNAKREELESFFGQHAKVTSVRMPRHVGDKRVFCGTALIEFSSEEDAEKILNQSLVFEGAELELKPKKEFDTERAQ EEEEFENSRSSTGPHNKNSSNEEGNYPKGLIIAFALKSKLAGGSAEQNGAQEPANGDANACEADGGSSSSENTTKENEQKVPETVKTDDENNVDHVDGDN GSESTVIKTGEEKSSEDSNEKEEGKEKPNPAASKDDKNVVLREDLKAVFERFGTVKYVDFKMGDESGYLRFEEAEAAQKARAAAVLAKEEGLVVKNFIAT LEPVTGEAEKEYWNQLRGQKERRFENKGNRGRGGKHYRGGGKHPRSRENNYGRPNKAQKVGAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	0	1
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	1.00	0.8906
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	1.41	0.8825
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	2.00	0.8604	Pt-IMP4.1
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	3.00	0.8745
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.006G148600 [exp]	8.24	0.7952	NFA902
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	8.36	0.8215
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	11.22	0.8323
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	12.60	0.7765
AT3G62120			Class II aaRS and biotin synth...		Potri.014G112400 [exp]	14.28	0.8148
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	14.31	0.7860

Compare expression of checked genes

Potri.006G241800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.