Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 450 / 2e-149 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G32710 426 / 7e-144 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT4G34440 430 / 3e-141 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 417 / 7e-137 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G49270 412 / 4e-134 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 411 / 9e-134 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 404 / 2e-133 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 397 / 1e-130 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 379 / 3e-121 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 376 / 5e-120 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124400 [exp] 427 / 3e-141 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 422 / 2e-139 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 423 / 6e-139 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 418 / 5e-137 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 414 / 3e-136 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 413 / 4e-135 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 390 / 4e-125 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 385 / 2e-123 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 377 / 3e-120 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 464 / 7e-155 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 465 / 2e-154 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10022129 [exp] 459 / 5e-152 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 451 / 1e-149 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 410 / 5e-135 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 401 / 2e-134 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 403 / 9e-134 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10041734 [exp] 404 / 3e-132 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 403 / 5e-131 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 390 / 5e-127 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G242800.1 pacid=42767623 polypeptide=Potri.006G242800.1.p locus=Potri.006G242800 ID=Potri.006G242800.1.v4.1 annot-version=v4.1 ATGTCATCAACACCATTAGAGTCACCGGCACCGGTGGATTCTCCGGCGGCCACTTCACAGCCTTTGCCACCATCACAACCACCAGCAGGGATGGATAATA CTAGTCCACCAACAATCCCGCAAATAGCACCATTTGCTTCCCCACCATCTCCTGTGGTGGTGGTGTTGCCACCTGCAATCCCTCCTGTTTCCAATCCAAC ACCTCCTCCGCTGACTCCAGTCCTATCGCCACCACCAATGACAATTCCAGTTTTATCACCCCCAGTTGCCTCAACACCACCACCTGTGGAGCTAGCTCCA CCACCCGAGGCTTCTACCAATCCTATAATTCCAGTACCTCCTCCAACATTGCTTCCTGAGCCTCAAATACCATCAGTTACTTCTCCACCACCATTGCCAA CGAGACCATCACTACCCCAACCACCACTACCTTCTCCTCCTCTGCCAACAAGTCCACCATCTCAGCAACCATCAACTTCTTGGCCACCTCCATCTCCACC AAAACCTGCTCCTCCAGCTCCAGCAACACCGACACCCATTATGCCTCCTCTGACAAGGCCTAGTTACCCACCAGCACCACCATCACTCGCATTGACGCCA CCTCCACCACTACCCACATCTATGGTATCTTCACCTCCATCACTCGCATTGACGCCACCTCCACCTCCACCACCACCCAAATCTATGGTATCTTCACCAC CATTACTCCCATTAGCAAAAGGAAGTCTGCCCATGAGCTCAAAACAGTTTCATATATCAACAGGGCTCGTTGTTGCATGTGCTTTTGGTGGGGTGTTTTT GCTACTTGTGCTTGGCCTTTTATTTATCTGTTGCAAAGATAAGAGAAGGAGAAACCACAGCACCCAAGAGCATTACAATACATCAAAAATCTTGGCCCCA ACAGATAACAATAAAAATGCTCACGTCCACCATTCTGAAATGAAGTGTTTTCAGTCAGGGGATTGTGTTATCACTGTGCAAACAAAGACCTTTCTGCCAT CTCCTTCAACCAGCAACACACGTTCTCGTTCCATAAATTCACCATGGACTGCGAATGCATTGCCACATCAAGGTCCTCCTGATGTTGCCATCAGTTTTTC GAATGGAACTTGCACATATGATGAACTAGTGGTTGCCACTAATGGATTCTCAGATGCCAACCTTCTTGGACAAGGTGGTTTTGGCTATGTTCACAAGGGG TTCTTTCCTTGCGGGAAGGAAATTGCAGTTAAGCAGCTGAAGGAGGGAAGTAATCAGGGTGAGCGCGAGTTTCAGGCAGAAGTTGAGATCATTAGTCGGG TGCATCATAAACATCTTGTTTCATTGGTAGGATATTGCATTAATGGTTCTGCTAGACTGCTTGTTTATGAGTTTGTTTCAAACAACACTTTGGAGTTTCA CTTGCACGGAACTGGGCAGCCTGTTCTAGAGTGGGAAACCAGATTGAAAATTGCTATAGGGTCTGCAAAAGGACTAGCATATCTGCATGAAGATTGTCAT CCGAAAATCATTCATCGCGATATCAAGGCATCCAATATTCTCCTTGATCATAATTTTGAGGCAAAGGTTTCTGACTTTGGACTTGCCAAAAGTTTTTCTG ATGCCAGTGCTAGCAGCACTCACATTTCCACCAGAGTGGTGGGGACTTTTGGCTACATGGCTCCAGAGTATGCATTAAGTGGCAAGCTAACAGATAAATC AGACGTCTATTCCTATGGAGTTGTGCTTTTGGAGCTAATAACTGGGCATCCACCTATCAGTCCCGCAGAATCGGTAATGAATGAAAGCTTGGTTGCCTGG GCTAGGCCTTTACTCACTCAAGCTCTGGAAGATGGCAATTTTGAAGCTCTTCTCGATCCACGACTAGGGACTCGGTATAATAACAGTGAGATGGCTAGCA TGGTTGCTTGTGCTGCTGCTTGTGTGCACCCTTCATCCTGGATCCGACCACGAATGAGCCAGATTGTTCATGCTTTGGAAGGCGGAATGTCTGCACAGGA TCTCAATGCAGGAATATTCAGGCCAAGAAATAACACACTATATGGTTCTTCAATAAGTTCAAGTTCCAGTACCTACCAATACAAGGAGAACATGAAGAGT TTCAACATGGCAAGGGGCAGTACGCAGGATGGCATCAGTGGGAACACTGGAACCACCAGCGAGTATGGTCTTAACCCATCTAGCTCAAGTAGCGAGGCTA GCAGCAGATAA
AA sequence Show only first row Show all	>Potri.006G242800.1 pacid=42767623 polypeptide=Potri.006G242800.1.p locus=Potri.006G242800 ID=Potri.006G242800.1.v4.1 annot-version=v4.1 MSSTPLESPAPVDSPAATSQPLPPSQPPAGMDNTSPPTIPQIAPFASPPSPVVVVLPPAIPPVSNPTPPPLTPVLSPPPMTIPVLSPPVASTPPPVELAP PPEASTNPIIPVPPPTLLPEPQIPSVTSPPPLPTRPSLPQPPLPSPPLPTSPPSQQPSTSWPPPSPPKPAPPAPATPTPIMPPLTRPSYPPAPPSLALTP PPPLPTSMVSSPPSLALTPPPPPPPPKSMVSSPPLLPLAKGSLPMSSKQFHISTGLVVACAFGGVFLLLVLGLLFICCKDKRRRNHSTQEHYNTSKILAP TDNNKNAHVHHSEMKCFQSGDCVITVQTKTFLPSPSTSNTRSRSINSPWTANALPHQGPPDVAISFSNGTCTYDELVVATNGFSDANLLGQGGFGYVHKG FFPCGKEIAVKQLKEGSNQGEREFQAEVEIISRVHHKHLVSLVGYCINGSARLLVYEFVSNNTLEFHLHGTGQPVLEWETRLKIAIGSAKGLAYLHEDCH PKIIHRDIKASNILLDHNFEAKVSDFGLAKSFSDASASSTHISTRVVGTFGYMAPEYALSGKLTDKSDVYSYGVVLLELITGHPPISPAESVMNESLVAW ARPLLTQALEDGNFEALLDPRLGTRYNNSEMASMVACAAACVHPSSWIRPRMSQIVHALEGGMSAQDLNAGIFRPRNNTLYGSSISSSSSTYQYKENMKS FNMARGSTQDGISGNTGTTSEYGLNPSSSSSEASSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.006G242800 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.008G011900 [exp]	8.06	0.7348
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.016G110500 [exp]	22.24	0.7433	Pt-CAC3.2
AT3G51670			SEC14 cytosolic factor family ...		Potri.016G127700 [exp]	23.87	0.7249
AT5G67390			unknown protein		Potri.005G145800 [exp]	33.46	0.7764
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	42.42	0.7529
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	47.62	0.7294
AT3G22142			Bifunctional inhibitor/lipid-t...		Potri.016G015500 [exp]	63.33	0.7547
					Potri.004G114450 [exp]	65.57	0.7271
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	81.02	0.7234
AT5G06270			unknown protein		Potri.006G206000 [exp]	85.58	0.7528

Compare expression of checked genes

Potri.006G242800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.