Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30780 84 / 3e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 75 / 3e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14770 72 / 2e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19890 71 / 4e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63400 69 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 69 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62914 67 / 6e-12 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 67 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 67 / 9e-12 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G48810 67 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119600 [exp] 103 / 8e-24 AT2G30780 432 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G037200 [exp] 76 / 2e-14 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G082400 [exp] 71 / 7e-13 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G105400 [exp] 69 / 2e-12 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 69 / 4e-12 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 67 / 8e-12 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 67 / 1e-11 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 67 / 1e-11 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 66 / 2e-11 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022128 [exp] 494 / 2e-174 AT2G15630 75 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011676 [exp] 320 / 8e-107 AT3G48810 63 / 1e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042683 [exp] 88 / 2e-18 AT2G30780 451 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029620 [exp] 86 / 8e-18 AT2G30780 455 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 75 / 4e-14 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 75 / 4e-14 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009465 [exp] 74 / 7e-14 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021645 [exp] 74 / 1e-13 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034721 [exp] 73 / 1e-13 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 73 / 2e-13 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G243000.1 pacid=42767741 polypeptide=Potri.006G243000.1.p locus=Potri.006G243000 ID=Potri.006G243000.1.v4.1 annot-version=v4.1 ATGGCGTTGGTACTCAGGGGAGTTCCATCATTAGCTAAACGAGGTTCAAGAATCCCTCAAATTATTCAATTATTATTTCCAATTCCATTCCAAGCCCAGC ACTCCTTTTCCACCGCTTCTTCTTCTGATCCTCTTCTTTCAAAGTTGCTTCAAACACCAACCTCCAAAATCATAATTACACTTGATTCAGACCACAGTTT TAATCTCAAAAGTTCTCAACTTTCATGGGATCCTCTCATTACCAATCTCAGATCTTCCTCTCCTGAGAAAGCACACTTGGTTTTAGAATGGAGATTGGGG AGAATGCTTGATGATAATGAGATAGATCATGATGAATACTCCAGTTTAATATCTCTTTGTGGAAAGATTCAAAATGTGTCGCTTGCAATGCACGTGTTTG CTTCGATGGAGGCTCGTGGAATTAAACCCACAACTTCAGTTTTCAATTCTCTTTTATATGCTTGCTTGTTATCAAGCAATGTGATAACAGCTCTTAGCTT GTTCGAGATAATGGAGAATTCCGAGAGCTATAAACCTAATTCTGAAACTTATGACAAGTTTGTAGCAGGGTTTTCGAATTTAAGAGATGTTAATAAAATG CAAGCATGGTTTGTGGGGAAAAGGGCTGCTGGTTTCTCTGCTAGTTTACAAAACTATGAGTGTCTTATTTCTGGTTGTGTTAAGGCTAGAGATTTTGATA CTGCTGATAGACTATATGAAGAGATGATGTCCTTGGGAATTATGCCTAGTTTACACATAATGGAATGGGTGCTGGAAGGGCATTGCAAACGGGGAAGCTG TGATAAAGTTAAAGAGTTTTTAAATTTTTTGCTGGAATGTAAGTTTGAGATCAATGGGAATATGATTGAAAATGTTGTCAGGCTGTATTCTGAGCTTGGG AAAGTGGATGAAATGGAGATGCTACTCGAAATGTTAATGGAGTTCAATCAGGTTGGTGAAGCATTATTGCAGCTGCACTGTGGGATTATAAGATTCTACG CCATGCTGGATAAGTTGGATGATGTTGAATTCTCTGTTGGGAGGATGATGAGTCAGGGGATGTCATTTAAAAGTCCAAGTGATGTTGAGAAGGTTATCTC TTCCTACTTCAGGCAAGAGGCTTATGAGAGGCTAGACTTGTTTCTGGAACATATTAAGAGCTACTATAAGCTCACTAGATCAACTTATGATTTGTTAGTT GCTGGTTACAGAAGAGTTGGATTGATGGAGAAATTGAATTTACTGATGGAGGATATGAAATTGGCAGGAGTATAG
AA sequence Show only first row Show all	>Potri.006G243000.1 pacid=42767741 polypeptide=Potri.006G243000.1.p locus=Potri.006G243000 ID=Potri.006G243000.1.v4.1 annot-version=v4.1 MALVLRGVPSLAKRGSRIPQIIQLLFPIPFQAQHSFSTASSSDPLLSKLLQTPTSKIIITLDSDHSFNLKSSQLSWDPLITNLRSSSPEKAHLVLEWRLG RMLDDNEIDHDEYSSLISLCGKIQNVSLAMHVFASMEARGIKPTTSVFNSLLYACLLSSNVITALSLFEIMENSESYKPNSETYDKFVAGFSNLRDVNKM QAWFVGKRAAGFSASLQNYECLISGCVKARDFDTADRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSCDKVKEFLNFLLECKFEINGNMIENVVRLYSELG KVDEMEMLLEMLMEFNQVGEALLQLHCGIIRFYAMLDKLDDVEFSVGRMMSQGMSFKSPSDVEKVISSYFRQEAYERLDLFLEHIKSYYKLTRSTYDLLV AGYRRVGLMEKLNLLMEDMKLAGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.006G243000 [exp]	0	1
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.003G045800 [exp]	2.82	0.8914
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.015G053400 [exp]	3.31	0.8606
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	4.89	0.8910
AT2G43250			unknown protein		Potri.007G124700 [exp]	6.24	0.8848
AT4G37020			unknown protein		Potri.007G043200 [exp]	6.92	0.8826
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	13.41	0.8822
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	14.69	0.8665
AT1G73380			unknown protein		Potri.004G067200 [exp]	15.09	0.8603
AT3G12130	C3HZnF		KH domain-containing protein /...		Potri.006G191900 [exp]	16.43	0.8646
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	16.43	0.8786	CHC901

Compare expression of checked genes

Potri.006G243000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.