Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11490 1355 / 0 adaptin family protein (.1.2) AT4G23460 344 / 8e-105 Adaptin family protein (.1) AT4G11380 341 / 1e-103 Adaptin family protein (.1.2) AT3G55480 76 / 1e-13 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101400 [exp] 353 / 3e-108 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 341 / 9e-104 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.010G202800 [exp] 78 / 3e-14 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.004G235200 [exp] 44 / 0.0008 AT1G31730 1392 / 0.0 Adaptin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022125 [exp] 1307 / 0 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 876 / 0 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10032286 [exp] 343 / 3e-104 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 343 / 3e-104 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 340 / 2e-103 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 338 / 1e-102 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10023408 [exp] 78 / 2e-14 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 77 / 4e-14 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [poplar] [flax] APCOP-app_sub PF09066 [poplar] [flax] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [poplar] [flax] TPR PF12717 [poplar] [flax] Cnd1 non-SMC mitotic condensation complex subunit 1
Representative CDS sequence Show only first row Show all	>Potri.006G243100.1 pacid=42766950 polypeptide=Potri.006G243100.1.p locus=Potri.006G243100 ID=Potri.006G243100.1.v4.1 annot-version=v4.1 ATGGCTCCTCCGGCCCAAACTAACCGATCTCCGTCGCCATCACAACCGTCCGGAAAAAGCGAAGTCACCGATTTAAAATCGCAACTCCGACAACTCGCCG GAAGTCGACTCCCCGGCGTTGACGATTCGAAACGCGAACTATTCAAAAAAGTAATATCATACATGACCATCGGAATCGACGTGTCGTCTGTATTCGGTGA AATGGTTATGTGCTCAGCAACATCAGATATAGTGTTGAAAAAGATGTGTTATTTATATGTTGGTAATTACGCGAAAGTTAATCCTGATTTAGCTTTATTA ACGATTAATTTCTTGCAAAGAGACTGTAAAGATGAAGATCCAATGATTAGAGGACTTGCATTACGGAGCTTGGGTTCTCTTAACGTTGCGAATTTAGTTG AGTATTTAGTTGGACCGTTGAATGCTGGGTTGAAAGATAACAATAGTTATGTTAGAATTGTCGCGGTTATTGGTGTTCTTAAATTGTATCATATTTCCGT GACTACTTGCATTGATGCTGATTTTCCCGCGGTTTTGAAGCATTTGTTGCTCAATGATCAAGATGCTCAGGTTGTTGCAAATTGTTTATTGGCATTGCAA GAAATTTGGAATGGGGAAGCTAGCACGTCAGAGGAAGCGTTAAAGGAGAGGGAGGCTTTGCTTAGCAAGCCGGTTATATATTACTTTTTGAATCGGATTA AGGAGTTCAGTGAATGGGCGCAATGTCTTGTGCTTGATTTGGCTGTGAAATATGTGCCCGCAGATAGTAATGAGATATTTGATATCATGAATCTTCTTGA AGATAGGCTTCAGCATGCGAATGGTGCTGTTGTTTTGGCAACCGCTAAAGTGTTTCTACATATGACATTATCTATGACTGATGTTCACCAGCAGGTATAT GAACGTATTAAAGCCCCGCTGCTTACCCTAGTGAGTTCTGGAAGTCCAGAGCAATCATATGCTGTTTTAAGCCACCTCCATCTCTTGGTGATGCGTGCAC CATATGTATTTTCCTCAGACTACAAACACTTCTATTGCCAGTACAATGAGCCATCTTATGTCAAAAAGCTGAAGCTTGAAATGTTGACTGCAGTTGCAAA TGAGAGCAGTACTTATGAAATTGTGACCGAGCTGTGTGAATATGCTGCCAATGTTGATATTCCTATTGCAAGAGAGTCAATTCGGGCCGTTGGAAAAATA GCACTGCAGCAGTATGATGTGAATGCTATTGTTGATAGGCTTCTTCAGTTTCTGGAAATGGAAAAGGACTATGTGACTGCTGAAGCTCTGGTTCTTGTTA AAGATCTTCTAAGGAAATACCCTCAGTGGAGTCATGATTGCATTGCAGTTGTTGGGAATATCAGCAGCCAGAATGTTCAAGAACCGAAGGCCAAAGCTGC TCTTATATGGATGCTAGGGGAATATTCTCAAGACATGAGTGATGCTCCTTATATCCTAGAGAATTTAACTGAGAATTGGGATGAAGAGCATTCTGCAGAG GTCCGTTTACATCTTCTCACGGCAGTAATGAAGTGTTTTTTCAAGAGGCCACCTGAGACTCAGAAAGCATTAGGAGCTGCATTGGCTTCAGGTCTTGCTG ATTTTCACCAGGATGTTCATGACAGGGCCTTGTTCTACTACAGGTTATTGCAACACAATGTAACAGTTGCAGAACGTGTTGTGAATCCTCCAAAGCAAGC TGTTTCTGTCTTTGCTGATACTCAGAGCAGTGAAGTCAAAGACCGCATTTTTGATGAATTTAATAGCCTCTCTGTTGTGTACCAGAAGCCCTCATACATG TTCACTGATAAGGAACACCGAGGACCATTTGAGTTTTCAGATGAGCTGGGCAATTTAGCTATCAGGACAGAATCTGATGTTCCAGTTCATGTAGTCGAGG CAAATGACAAGGATCTGCTTCTAGGTACTTCCGAGAAGGAAGAAAGCAGAGGTTCTGGTACCAATGGTTCTGCATACACAGCTCCTTTATATGACACTTC ATTGCTATCTACTGCTACACAAGTACAACCAGAGTTGCCAATTTCAAACCCTGCAGCAGCTGGCCTGAGTCCACAATCTAGCTTGGCCATTGATGATCTA CTTGGTTTAGGTCTACCTGCAGCTCCTGCTCCTACACCTGCTCCTTCACCTCCTTCTTTGAAGCTTAATGCCGGAGCTGTCCTTGATCCTGGCACTTTTC AGCAAAAATGGCGTCAACTACCAATATGTTTATCAGAGGAACTCTCTGTAAGTCCTCAAGGAGCTGCAGCATTAACAACACCTCAGGCCCTTCTCTGGCA TATGCAAGGCCATTCCATCCAATGTATTGCATCTGGCGGTCAATCACCCAACTTGAAGTTTTTCTTCTTTGCTCAAAAAGCAGAAGAGTCATCGATCTTT CTTATAGAGTGTAAAATCAACACATCATCAGCTAAAACACAAATAACTATCAAAGCTGATGATCAGAGCATGTCTCAAGCATTCTCTACTTTGTTCCAGT CAGCATTGTCCAGGTTTGGCACATCATGA
AA sequence Show only first row Show all	>Potri.006G243100.1 pacid=42766950 polypeptide=Potri.006G243100.1.p locus=Potri.006G243100 ID=Potri.006G243100.1.v4.1 annot-version=v4.1 MAPPAQTNRSPSPSQPSGKSEVTDLKSQLRQLAGSRLPGVDDSKRELFKKVISYMTIGIDVSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL TINFLQRDCKDEDPMIRGLALRSLGSLNVANLVEYLVGPLNAGLKDNNSYVRIVAVIGVLKLYHISVTTCIDADFPAVLKHLLLNDQDAQVVANCLLALQ EIWNGEASTSEEALKEREALLSKPVIYYFLNRIKEFSEWAQCLVLDLAVKYVPADSNEIFDIMNLLEDRLQHANGAVVLATAKVFLHMTLSMTDVHQQVY ERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPYVFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESSTYEIVTELCEYAANVDIPIARESIRAVGKI ALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGNISSQNVQEPKAKAALIWMLGEYSQDMSDAPYILENLTENWDEEHSAE VRLHLLTAVMKCFFKRPPETQKALGAALASGLADFHQDVHDRALFYYRLLQHNVTVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYM FTDKEHRGPFEFSDELGNLAIRTESDVPVHVVEANDKDLLLGTSEKEESRGSGTNGSAYTAPLYDTSLLSTATQVQPELPISNPAAAGLSPQSSLAIDDL LGLGLPAAPAPTPAPSPPSLKLNAGAVLDPGTFQQKWRQLPICLSEELSVSPQGAAALTTPQALLWHMQGHSIQCIASGGQSPNLKFFFFAQKAEESSIF LIECKINTSSAKTQITIKADDQSMSQAFSTLFQSALSRFGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11490			adaptin family protein (.1.2)		Potri.006G243100 [exp]	0	1
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	7.34	0.8747
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	17.29	0.8749
AT1G71900			Protein of unknown function (D...		Potri.019G084600 [exp]	20.49	0.8096
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	23.08	0.8068
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	30.06	0.8617
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Potri.003G109100 [exp]	36.12	0.8338
AT3G48860			unknown protein		Potri.012G105400 [exp]	38.96	0.8047
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	40.24	0.8002
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	43.81	0.8364
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	50.00	0.8336

Compare expression of checked genes

Potri.006G243100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.