Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RD22.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 320 / 3e-107 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 157 / 3e-45 ATUSPL1 unknown seed protein like 1 (.1) AT1G60390 140 / 1e-36 PG1 polygalacturonase 1 (.1) AT1G23760 133 / 3e-34 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G70370 132 / 8e-34 PG2 polygalacturonase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243600 [exp] 624 / 0 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 535 / 0 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 233 / 3e-74 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 233 / 3e-74 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 233 / 7e-74 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 228 / 4e-72 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.009G114600 [exp] 181 / 9e-55 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 174 / 9e-52 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 170 / 6e-50 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007674 [exp] 424 / 9e-148 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 380 / 2e-130 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10003263 [exp] 328 / 3e-111 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 189 / 2e-58 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 182 / 1e-54 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006665 [exp] 177 / 4e-52 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10032324 [exp] 172 / 4e-51 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10006667 [exp] 169 / 7e-50 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10040475 [exp] 160 / 7e-47 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1) Lus10042335 [exp] 154 / 3e-44 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.006G243700.1 pacid=42770479 polypeptide=Potri.006G243700.1.p locus=Potri.006G243700 ID=Potri.006G243700.1.v4.1 annot-version=v4.1 ATGCCAAAATCTGTCAGAGATCTTCTACACCCAGACTTGGTGGAAGACAAAAGCACTTCTGTTGCTGTAGGGAAGGGTGGTGTAAATGTTGATGCAGGAA AAGGGAAGCCAGGGGGCACTGCTGTTAATGTAGGAAAGGGTGGTGTGAGTGTTGATGCAGGGAAAGGAAAGCCCGGAGGAACCAATGTAAATGCAGGAAA GGGTGGTGTGAATGTTGATGCTGGGAAAGGAAAGCCAGGCAGCGGCACCCATGTCAGCGTCGGGGGCAAAGGTGTTGGTGTTGCCGCTGGAAAGCCAGGG AAGAGAACCGATGTTGGTGTTGGCAAAGGCGGAGTATCTGTGACCAAAGGGCACCATGGCAAGCCCGTAATTGTTGGGGTACGCCCAGGGCCAGGCCCGT TCAACTACATTTATGCTGCAACTGAGACTCAACTCCATGATGACCCAAATGTAGCCCTTTTTTTCTTGGAGAAAGACATGCATCCAGGCAAAATTATGAA CTTGCAATTCACTGAAAACACTAACACAGCAACTTTCTTACCACGTCAAGTCGCCGATTCAATACCCTTTTCATCTGACAAATTGCCAGAAATCTACAGT GAGTTTTCAGTGAAACCTGGATCAATGGAAGCTGCGGAGATGGAGAATACAATCAAGGAATGTGAAAGCCCTGGAATTAAAGGAGAGGAGAAATACTGCG CGACATCACTAGAGTCAATGATTGACTTCAGCACTTCCAAATTAGGAAAGAATGTTCAGGCAATCTCCACAGAAGTGGACAACCAAACCAAGATGCAGAA GTATACAATTAAGACCGGAGTAAAGAAGGTGGCAGGAGACAAATCTGTAGTGTGCCACAAGCAGAACTATGCATATTCCGTCTTTTACTGCCATGCAACG CAAACCACTAGGGCTTACACGGTTCCCTTGGAGGGTGATGATGGAACAAAGGCTAAAGCTGTAGCAGTGTGCCACACAGATACGTCAGCATGGAACCCAA AGCATTTGGCTTTCCAGGTGCTCAACGTTAAGCCAGGAACCGTACCAGTCTGCCATTTCCTTCCTCAGGATCATGTTGTGTGGTTTTCCAACTAG
AA sequence Show only first row Show all	>Potri.006G243700.1 pacid=42770479 polypeptide=Potri.006G243700.1.p locus=Potri.006G243700 ID=Potri.006G243700.1.v4.1 annot-version=v4.1 MPKSVRDLLHPDLVEDKSTSVAVGKGGVNVDAGKGKPGGTAVNVGKGGVSVDAGKGKPGGTNVNAGKGGVNVDAGKGKPGSGTHVSVGGKGVGVAAGKPG KRTDVGVGKGGVSVTKGHHGKPVIVGVRPGPGPFNYIYAATETQLHDDPNVALFFLEKDMHPGKIMNLQFTENTNTATFLPRQVADSIPFSSDKLPEIYS EFSVKPGSMEAAEMENTIKECESPGIKGEEKYCATSLESMIDFSTSKLGKNVQAISTEVDNQTKMQKYTIKTGVKKVAGDKSVVCHKQNYAYSVFYCHAT QTTRAYTVPLEGDDGTKAKAVAVCHTDTSAWNPKHLAFQVLNVKPGTVPVCHFLPQDHVVWFSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	0	1	Pt-RD22.1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	1.00	1.0000
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G097900 [exp]	2.00	0.9990
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Potri.005G153600 [exp]	7.74	0.9975	Pt-CER2.1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.005G242800 [exp]	7.74	0.9952
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.016G062700 [exp]	8.12	0.9979
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	9.38	0.9975	GA20ox5
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054600 [exp]	10.72	0.9975
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	10.95	0.9965
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.002G189300 [exp]	12.80	0.9934
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.003G065266 [exp]	14.14	0.9973

Compare expression of checked genes

Potri.006G243700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.