Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11470 373 / 1e-119 bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G15605 124 / 3e-30 nucleic acid binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036500 [exp] 483 / 1e-164 AT5G11470 209 / 6e-59 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G174700 [exp] 220 / 3e-66 AT3G15605 150 / 2e-41 nucleic acid binding (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037903 [exp] 335 / 8e-107 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10038628 [exp] 237 / 1e-69 AT5G11470 181 / 7e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 46 / 0.0001 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 45 / 0.0001 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10003906 [exp] 45 / 0.0002 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.006G244000.3 pacid=42770173 polypeptide=Potri.006G244000.3.p locus=Potri.006G244000 ID=Potri.006G244000.3.v4.1 annot-version=v4.1 ATGGTAGAAGCAAAAAAAGTTGAGAACATCGAATTTAAGTGGGGTAAACAGAGAGGAGTTGGTGGGAAAAAGAAAGATGTAAAATTTTATGAATCTTTCT CCTATGATGGTGTGGAGTATGCTCTATATGATTCTGTTTACATGTACGAGGAAGGTGAGACAGAGCCTTATATTGGGAAGCTCCTAAAGATATGGGAGAA TGCTGACAAGACAAAGAAAGTGAAGGTTCTATGGTTTTTCTGTCCTCGTGAGATTTCCAATTATCTTGGAGATGAGAAGACTGCTGAGAATGAATTGTTT TTGGCATCTGGTGAAGGTGTAGGCAGCACAAATGTTAATCCTTTGGAAGCAATTGCTGGAAAATGCAATGTGGTATGCAGTTCAAAGGATAGTAGGAATC CACAACCATCAGATGAAGAACTTCAAGAGGCTGACTTTGTTTTTTATCGTACATTTGATGTTGGGAACTGTAGGATCTTGGATAAGATAGATGACAAAAT TGCTGGGATTGAAGTGAAGTTCTTATTGAACAGAGTGGGTAATCAGAGTTCCAGTGGTGTTCCAAAACTTGATTCAAAAAAGAAAGAAGTAAGTGGAAAT TTTGTGGCTACTAATGACACAAGGATTTTGACCAGGACAGAATCTTATCTTGGAGAGAAGGCTACTTCTAGTTCACATGTAAAGTTTAATGAAGTGACTA AAATAAATGATCGGCTGGTAGATAATTCTGGTGAGACGGCAAGTTCAAGCTCTAAAGTTAAGCAAATTTCAGACATAAAACCTTCATTGGCCAACCAGAA ATGTTCACCAGGAGAAAATTCTGCATCTAATTTAGGGTTAGGTGAAATGACTAAAGTTGATGAACAGGAAGGCATACCGAGTGACATCATCGCTTCAAGT TCTAAAGATGATGTTGGCTGGAGTGAAAGTAAAGTTGATAAAGTCTTTGCTGATCAGGTTCTAATTGAAGAGAAAGTAAAAGTTGCCAAAGACTGTGGTG ACTTAGATGACCGGCCATCTAAGAAAGCAAAGCTTGATGATTTGGCAAAAGCATCTTATGATAACAAAGTGAAAGGTGTGCAGAAAGTAAGTCATGATTC CAATGGCAGCAACTCCAAGTCTGTAGCCCAAACAACCCCTGCTTCTGAAGATAAATCAAAATCTAATCTCACTAAAGATCATCATGAGAACAACAGCGGC CTTTCCAAGAGGCCAAAGCCTGATGAGAAGCTTACTAGACTTGCTAATGGCAAGTTTCCTGAAGCATCTCTAAGACAGTCTTCAGAGGAGGGCAGTAAAA CTAACTGCCATATACAGGAAGTCACTCGCAGGCCAGAAGCTGATAGAAGCAAGTGGTTTAGGGGACTTCCATGGGAAGAAAGAATGCAAACTGCTCACGA GCAAGGAACTCTTGTCCTGCTACAGAATCTGGATCCGTCTTATACTTCAGCAGAAGTAGAGGATATCATTTGGCATGCCTTCAAGCAAAGTTGCACTGTG AAGATGATTCAAAGGACTGCACTTGCCAGCCCTCACTCTGTTGTTTATGCTGCAGGTCAGGCTTTTGTTATATTCCAGAAAAGGGAAGTAGCAGAGATGG CAGTTGCAAAATTAGATGAAGGTTGTTTAATGCTATCAAATGGGAGGCCTCTGGTTGGCAGCATCGCTGCTCCTTGTTTCCCAGGAAAGCAGTCAACCTT TTTTGGTCATCTTGTTATCAATAAACTTAGAATCCACAAGCAGCGTGAGATGAAAGAAGCAGTATCTACTTCACATTGTTCTCAGCCCAATACACTTGAG TATGAAATGGCAATGGATTGGTGCCTACTACAAGAAAGATCAGATCTAGCTTTGAGAAAGCTACGCCAGCAACAAAGGCAAGAGTTGAGAAAACTTTGGG TTACTTTGAAGTGTAAATGA
AA sequence Show only first row Show all	>Potri.006G244000.3 pacid=42770173 polypeptide=Potri.006G244000.3.p locus=Potri.006G244000 ID=Potri.006G244000.3.v4.1 annot-version=v4.1 MVEAKKVENIEFKWGKQRGVGGKKKDVKFYESFSYDGVEYALYDSVYMYEEGETEPYIGKLLKIWENADKTKKVKVLWFFCPREISNYLGDEKTAENELF LASGEGVGSTNVNPLEAIAGKCNVVCSSKDSRNPQPSDEELQEADFVFYRTFDVGNCRILDKIDDKIAGIEVKFLLNRVGNQSSSGVPKLDSKKKEVSGN FVATNDTRILTRTESYLGEKATSSSHVKFNEVTKINDRLVDNSGETASSSSKVKQISDIKPSLANQKCSPGENSASNLGLGEMTKVDEQEGIPSDIIASS SKDDVGWSESKVDKVFADQVLIEEKVKVAKDCGDLDDRPSKKAKLDDLAKASYDNKVKGVQKVSHDSNGSNSKSVAQTTPASEDKSKSNLTKDHHENNSG LSKRPKPDEKLTRLANGKFPEASLRQSSEEGSKTNCHIQEVTRRPEADRSKWFRGLPWEERMQTAHEQGTLVLLQNLDPSYTSAEVEDIIWHAFKQSCTV KMIQRTALASPHSVVYAAGQAFVIFQKREVAEMAVAKLDEGCLMLSNGRPLVGSIAAPCFPGKQSTFFGHLVINKLRIHKQREMKEAVSTSHCSQPNTLE YEMAMDWCLLQERSDLALRKLRQQQRQELRKLWVTLKCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.006G244000 [exp]	0	1
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	1.73	0.7948	UBP26.2
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	5.00	0.7672
					Potri.003G039551 [exp]	6.24	0.7807
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018300 [exp]	10.95	0.7290
AT2G03667			Asparagine synthase family pro...		Potri.010G157700 [exp]	11.22	0.7139
AT1G02960			unknown protein		Potri.002G208058 [exp]	12.64	0.7698
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	13.41	0.7392	SDG916,Pt-CLF.2
AT4G38640			Plasma-membrane choline transp...		Potri.004G173600 [exp]	17.97	0.7094
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	18.97	0.7103
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	19.62	0.7275

Compare expression of checked genes

Potri.006G244000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.