Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 602 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 546 / 0 unknown protein AT1G02110 187 / 5e-50 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 187 / 8e-50 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 159 / 3e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 139 / 6e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 128 / 1e-30 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 119 / 2e-27 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT4G35240 118 / 4e-27 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 113 / 1e-25 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 1049 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 583 / 0 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 556 / 0 AT1G52320 615 / 0.0 unknown protein Potri.005G112300 [exp] 192 / 2e-52 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 186 / 6e-50 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 183 / 2e-48 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 176 / 4e-46 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 165 / 3e-42 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 156 / 2e-39 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022116 [exp] 687 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 621 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 572 / 0 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 570 / 0 AT1G52320 747 / 0.0 unknown protein Lus10038627 [exp] 542 / 0 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10002864 [exp] 313 / 3e-101 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 201 / 2e-60 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 183 / 7e-49 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 176 / 1e-47 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 164 / 5e-42 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.006G244100.1 pacid=42769859 polypeptide=Potri.006G244100.1.p locus=Potri.006G244100 ID=Potri.006G244100.1.v4.1 annot-version=v4.1 ATGGGGTGTGCACAGTCAAAGGTGGATAACGAAGAATCAGTTTCAAGATGCAAAGAGCGGAAAATCTTGATGAAAGAAGCGGTGGCAGCAAGAAATGCTT TTGCTGCTGGTCATTCAGGCTATGCTATTTATTTAAAGAATACTGGTGCTGCTTTGAGTGATTATGGCCATGGAGAAGCTAATCATGATGATTCTCAGTT TCAACAGCCTTCTTCTCAACCGCCGCCTCCTCCCCCTCCTCCGCCTCCTCCCCCTCCCCCGCATCCGCCGTCGATGGACAATCTTCCCCCGCCTCCGCCG CCGCTTCCTAACTTTTCTCCCAGTCCGATTAAGAGGGCCATGAGTATGCCTGATATAGTGATGAACGGGAAGCAGATGGGTGATTCTGATGTGATTGCGG AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGCAGGAGTTGCGGAATAGGAGTTTGAGTAGAAAGAATAAGGATTATGAAAATAGTGAGAAGGTTTCGCA GCGGGGCCCACAGAACAATAGGGGTGTGGGGCCAGGGGAGGAGGATACGCGTCCGAGGACCTCACCAAGGACGGTGGAGAGTCATTCCTCGGTGATGCCG CCGATGCCGGAGGCGAAGAACATGGCCTGGGATTATTTCTTTATGACGGATAATATGCCGGGTTCGTCCTTGGATCCTGAGGAGGATGTGAGTAGGAATG GGGGTAATTTTGGGAATGTTGAGAATGTCGGTGTTGGGTTTGCTGGGGTTGGGGATTTGAGGGGTGGGGTAGAGGGTGGTGGTGGTGAGATTGATGAGGT CGAGCCAAAGACGCCGGAGAAGGCGGGGGACAAGATGGATCCTGTGGTGGAAGAGGAGGAGGAAGGGGGTGTGGAGAAGAATGAAAGGAAGCAAATGGAG CATTCAAAAACGGCACCACCAGAGTTTAGTGCGGTGAATTTGACGGGGAGGAAAGGGGGGTCTGTTCCTAGTGTGAATTTGATGCAGGTTTTGAACAAAA TTGATGATCATTTCTTAAAAGCATCGGAGAGTGCACAAGATGTTTGTAAGATGCTTGAGGCCACTCGCTTGCATTACCATTCTAATTTTGCCGACAATCG AGGACATATTGATCATTCCGCTAGGGTTATGCGTGTTATCACCTGGAATAGGTCATTCAAAGGTGAGCCTAGGGCTGAAGGTGGAAAGGATGAACTTGAT ACTGAAGATTATGAAACTCACGCTACTGTTTTGGATAAGTTGTTGGCATGGGAAAAGAAACTCTATGATGAAGTGAAGCAAGGGGAGCTTATGAAGCTTG AGTACAAGAAGAAGGTTGCTTTGCTAAATAAGCAGAAAAAACGTGGTGCTAGTACTGAATCCTTGGAGAAAACAAAAGCAGCTGTGAGTCATCTGCATAC AAGATATATAGTTGACATGCAATCCATGGACTCAACCGTTGCAGAAGTGAATCAAATACGTGATCAGCAGCTGTATCCAAAACTTGTTTGTCTTGTTGAC GGGATGGCGAAAATGTGGGCAAGTATGTGCATGCATCATGACAGCCAACTGAATATTGTTACAGACCTTAAATCCCTTGATGTCAACCATGCTATCAAGG AAACATCCAAACACCATCATGAGCGCACAATCCAACTTTGGAAAGTTGTCCAAGGATGGCATTCACAATTCGAAAAGCTTGTGACCCACCAGAAGCAATA CATTCACACTCTTACTAGTTGGTTAAAGCTAAATCTGATCCCCATTGAAAGCAGCTTAAAAGAGAAAACATCATCTCCACTGAGAGCCCAGAATCCCCCT ATCCAAGCCCTTCTCCATTCATGGCATGACAATCTGGAAAAGCTTCCAGATGATCTTGCCAAATCTGCCATCTTTTCATTTGCAGCTGTGATAGAAACCA TAGTACGCCATCAGGAAGAAGAGATGAAGCTAAAGGAGAAGTGTGAGGAAACCAGGAAGGAGCTTTTGCGCAAGAACCAGGCATTTGAGGAATGGCACCA AAAATACATGCAGCGGAGAACCCCTGACGGAACAGATGCTGATAGAGGTGAAGACACAAATCCCAATCCTGTCTCCGAGAGGCAGTTGGCAGTAGAGAGT TTAAATATTAGGCTGAAGGAGGAACTAGAAGCTCACCAGAAACATTGCCTTCAGGTAAGAGAGAAATCAGTTGGAAGTCTCAAACTTCGCTTGCCTGAAC TGTTCCGCGCTCTGTCAGACTATGCTCATGCCTGTTCTGATTCTTATGAGAAACTAAGGTCCATCACACACTCACAGAAGAATTCAAATCACAGTCACGC ATAA
AA sequence Show only first row Show all	>Potri.006G244100.1 pacid=42769859 polypeptide=Potri.006G244100.1.p locus=Potri.006G244100 ID=Potri.006G244100.1.v4.1 annot-version=v4.1 MGCAQSKVDNEESVSRCKERKILMKEAVAARNAFAAGHSGYAIYLKNTGAALSDYGHGEANHDDSQFQQPSSQPPPPPPPPPPPPPPHPPSMDNLPPPPP PLPNFSPSPIKRAMSMPDIVMNGKQMGDSDVIAEEEEEEEEEEVQELRNRSLSRKNKDYENSEKVSQRGPQNNRGVGPGEEDTRPRTSPRTVESHSSVMP PMPEAKNMAWDYFFMTDNMPGSSLDPEEDVSRNGGNFGNVENVGVGFAGVGDLRGGVEGGGGEIDEVEPKTPEKAGDKMDPVVEEEEEGGVEKNERKQME HSKTAPPEFSAVNLTGRKGGSVPSVNLMQVLNKIDDHFLKASESAQDVCKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFKGEPRAEGGKDELD TEDYETHATVLDKLLAWEKKLYDEVKQGELMKLEYKKKVALLNKQKKRGASTESLEKTKAAVSHLHTRYIVDMQSMDSTVAEVNQIRDQQLYPKLVCLVD GMAKMWASMCMHHDSQLNIVTDLKSLDVNHAIKETSKHHHERTIQLWKVVQGWHSQFEKLVTHQKQYIHTLTSWLKLNLIPIESSLKEKTSSPLRAQNPP IQALLHSWHDNLEKLPDDLAKSAIFSFAAVIETIVRHQEEEMKLKEKCEETRKELLRKNQAFEEWHQKYMQRRTPDGTDADRGEDTNPNPVSERQLAVES LNIRLKEELEAHQKHCLQVREKSVGSLKLRLPELFRALSDYAHACSDSYEKLRSITHSQKNSNHSHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25590			Protein of unknown function (D...		Potri.006G244100 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	14.14	0.8128
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	18.16	0.8193	GCN2.2
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	24.18	0.8174
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	36.40	0.8107
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	41.85	0.8012
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	48.46	0.8010
AT5G47740			Adenine nucleotide alpha hydro...		Potri.015G083100 [exp]	50.24	0.7835
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	53.91	0.7659
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	75.89	0.7849
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	79.38	0.7715

Compare expression of checked genes

Potri.006G244100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.