Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32660 632 / 0 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 565 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 528 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT5G35980 187 / 1e-52 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 174 / 6e-48 Protein kinase superfamily protein (.1.2) AT3G53640 172 / 9e-48 Protein kinase superfamily protein (.1) AT3G25840 172 / 1e-47 Protein kinase superfamily protein (.1.2) AT2G17530 162 / 3e-45 Protein kinase superfamily protein (.1.2.3) AT3G17750 166 / 6e-45 Protein kinase superfamily protein (.1) AT1G73460 166 / 8e-45 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213400 [exp] 581 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.016G079900 [exp] 568 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.012G089700 [exp] 546 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G085700 [exp] 544 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 537 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.019G043400 [exp] 193 / 3e-54 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 192 / 5e-54 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G126900 [exp] 177 / 1e-48 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G188400 [exp] 174 / 3e-48 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024431 [exp] 560 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 556 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10036878 [exp] 542 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 538 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 536 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 229 / 3e-73 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 187 / 7e-52 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 186 / 8e-52 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10042297 [exp] 171 / 1e-46 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10027636 [exp] 158 / 1e-46 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G244400.1 pacid=42770295 polypeptide=Potri.006G244400.1.p locus=Potri.006G244400 ID=Potri.006G244400.1.v4.1 annot-version=v4.1 ATGGTTGCAGCAGTTGTCGATATCGAAAGGATGGAGAAGCAGCAGCGTGTCAGAAAACGGCCAAGATTCGCGTGGGACGTAGGCCCCGCACAACCAGAGG AACGGGCTCCAGTGGTGGCTCGAAATGAGGGGATGGCGGCTAGGTATGTGTCCCCGCCGAGAAGGGAGGATGATCGTGAAGGACATTATATGTTTAATCT CGGCGAGAATTTGACTCCAAGATATAAAATATTGAGCAAAATGGGTGAAGGCACTTTTGGGCGAGTTTTGGAATGTTGGGATCGCCAAACACGAGAGTAT GTGGCAATCAAGGTAGTACGTAGCATTCACAAGTATCGCGATGCAGCAATGATTGAGGTCGATATACTTCAGCGTGTTGCCAAGAATGAAAAAGCCAGCT CACGATGTGTTCAGATTCGGAACTGGTTTGATTACCGCAATCACATTTGTATTGTATTTGAGAAGCTTGGACCAAGTTTGTTTGATTTTCTAAAGAGAAA TAAATACAGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGATTTACGCTTAATTCACACTGAC CTGAAGCCAGAAAATATACTTCTTGTGTCATCTGAATATATAAAGCTTCCAGGCTCCAAGAGGAGTTCTTCAGATGAAATGCACTTCAGGTGCTTGCCAA AGTCAAGTTCCATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAACCATAGCTCCATTGTTTCAACGAGACATTACAGAGCCCCTGAGGT CATTCTAGGTCTAGGTTGGTCTTATCCATGTGACTTGTGGAGCATTGGTTGTATACTAGTTGAGTTATGCTCGGGCGAAGCTCTATTCCAGACACACGAG AACTTGGAACATTTAGCTATGATGGAGAGGGTATTGGGACCTCTGCCAGAGCACATGATTCTTAGGGCTAATCGTGGAGCTGAGAAATATTTTCGGAGAG GATCCAGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCTGTGAAGAAGCTTGATCGACTAAAGCTTATGATATCTCAACACGTAGA CAGCTCAAGATCTTCACTCATTGACCTGCTGCATGGCTTGTTAAAATATGATCCATCCGAACGTCTAACAGCTTGGCAAGCTCTTAATCATCCGTTCTTC AAGTGTCCAACTTAA
AA sequence Show only first row Show all	>Potri.006G244400.1 pacid=42770295 polypeptide=Potri.006G244400.1.p locus=Potri.006G244400 ID=Potri.006G244400.1.v4.1 annot-version=v4.1 MVAAVVDIERMEKQQRVRKRPRFAWDVGPAQPEERAPVVARNEGMAARYVSPPRREDDREGHYMFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREY VAIKVVRSIHKYRDAAMIEVDILQRVAKNEKASSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYSPFPVDLVREFGRQLLESVAYMHDLRLIHTD LKPENILLVSSEYIKLPGSKRSSSDEMHFRCLPKSSSIKLIDFGSTAFDNQNHSSIVSTRHYRAPEVILGLGWSYPCDLWSIGCILVELCSGEALFQTHE NLEHLAMMERVLGPLPEHMILRANRGAEKYFRRGSRLNWPEGAVSRESIRAVKKLDRLKLMISQHVDSSRSSLIDLLHGLLKYDPSERLTAWQALNHPFF KCPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32660		AME3	Protein kinase superfamily pro...		Potri.006G244400 [exp]	0	1
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	11.35	0.8468
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	14.42	0.8338
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	18.81	0.8291	ATKEA4.2
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	22.29	0.8285
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	24.67	0.8325	Pt-VPS33.2
AT3G04490			unknown protein		Potri.019G019100 [exp]	25.09	0.8158
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	30.85	0.8272
AT1G60460			unknown protein		Potri.010G041900 [exp]	32.55	0.8309
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	33.80	0.8269
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	35.09	0.8107

Compare expression of checked genes

Potri.006G244400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.