Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15130 892 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 504 / 7e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 505 / 3e-166 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 498 / 9e-166 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 497 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 489 / 1e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 481 / 9e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 473 / 4e-156 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 468 / 9e-155 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 467 / 1e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 539 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 531 / 6e-176 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 514 / 6e-173 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 512 / 5e-171 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 503 / 1e-168 AT3G22690 582 / 0.0 unknown protein Potri.004G047800 [exp] 508 / 2e-168 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 502 / 4e-168 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 493 / 2e-165 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 494 / 4e-164 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030124 [exp] 725 / 0 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 503 / 4e-168 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 509 / 1e-167 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 503 / 2e-167 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 490 / 1e-163 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014707 [exp] 487 / 2e-160 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 486 / 4e-160 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 481 / 4e-159 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 479 / 2e-157 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 475 / 2e-157 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G244500.1 pacid=42767562 polypeptide=Potri.006G244500.1.p locus=Potri.006G244500 ID=Potri.006G244500.1.v4.1 annot-version=v4.1 ATGAATAGGGGGTTGTTTTCAGTGTTAAATGAGAGGCAGAAATTTGCAAACTTTTTGCGGTTTTGTTCAAAAAGTTTGTTACTTGATCAAGGAATGCAAG TACATGGAGCTTTAGTGAAAATGGGGTTTGGTTTTGACTTGATGTTAAGCAATGATCTAATAGTTATGTATGGAAAATGCGGTAGACTAGGTGTTGCTTG TGATGTGTTTGATAGAATGCTCAAAAGAAATGTGGTTTCTTGGACGGCCCTTATGTGCGGGCACATACAAAATGGGAACCCGCTAGAGTCATTATTACTA TTCTCCAAAATGGGCTTATCGGGTGTGAAACCGAATGATTTCACCTTTTCAACGAATCTTAAAGCCTGTGGTTTGTTGAATGGCCTAGATATTGGGAGAC AAATTCATGATATTTGTGTGAAAACTGGATTTGATATGGTGAATGTGGTAGGGAATTCTATCATTGACATGTACTCAAAATGTGGAAGAATCAATGAAGC TGCCTGTATGTTTGAAGTTATGCCTGTAAGGAACCTTATAAGTTGGAATGCTATGATAGCAGGATATACAGTTGCAGGATTCTGTGAGAAAGCTCTAGTT TTGTTTCAAAAAATGCAAGAAGTTGGGGGATTCCTCGATGAATTCACGTTTACAAGCACGTTGAAAGCTTGCAGTGATCTTGGTGCAATCAAAGAAGGAA ACCAAATTCATGCTTTCTTGATTACTGGTGGTTTCTTGTATTCTGTTAATACTGCTGTTGCTGGTGCTCTCATTGATTTATATGTGAAATGTGGGAAGTT GTTCATGGCGAGAAGAGTGTTTAGTCATATTGAAGAGAAACATGTAATATCATGGACGGCACTTATTCTTGGTTACGCTCAAGAAGGAAACTTAGCAGAG TCCATGGAGTTGTTTAGGCAGCTTAGAGAGAGCAGCATTCAAGTTGATGGGTTTATTCTGTCAAGTATGATGGGCGTGTTCGCTGATTTTGCACTTGTTC AGCAAGGCAAGCAAATGCATGCATTTGCAATTAAAGTCCCCTCTGGTGTAGACATCTCAGTATGCAACTCAATTTTGGATATGTATCTGAAGTGTGGAAT GATAAATGAGGCAGAGAGACTTTTCAGTGAAATGCCTGCTAGAAATGTGATTTCTTGGACAGTTATGATCACTGGCTATGGAAAGCATGGTCTCGGCAAA GAGGCAATTCGTCTCTTTGATGAAATGCAATTAGATAGTACTGAGCCTGATGATGTGACTTACTTGGCAGTGCTCTTAGGCTGTAGCCATTCAGGACTAG TAGAGAAAGGTCAAGAATACTTCTCAAGGTTATGCAGCTACCATGGGATCAAAGCTAGAGTAGAGCATTATGCATGCATGGTTGATCTCCTTGGCCGAGC TGGGCGCTTAAAAGAAGCTAAGAACCTCGTCGACAGCATGCCTCTAGAGGCAAATGTAGGGATATGGCAGACATTGCTGAGTGCTTGCAGAGTACATGGA GACTTGGAATTGGGGAAAGAAGTAGGTGGCATTCTTTTGAGGTTAGACAGTGAAAATCCTGTTAATTATGTGATGATGTCCAACATTTATGCTGATGCAG GCTATTGGAAAGAATGTGAGAGAATAAGAGAATTGGTGAAGTCAAAGAAGTTAAAGAAAGAGGCAGGACGTAGTTGGGTAGAGATTGACAAGGAGGTACA CTTTTTCTATGGCGGAGATGATACGCATCCCCTCACAGAGAAAATACATGAAATCTTGAAAGAAATGGAGAGGAGGATGAAAGAAGAGTTAGGTTATGTT TACGGGGTTAAATATGCATTACACGATGTGGAAGAAGAGTCAAAGATGGATAACTTGAGAGTTCACAGTGAGAAGTTGGCAATAGGGTTGGCATTGGTTT GTGGGGGTTTAGAAGAGGGGAGAAAGGTGATTCGTGTATTCAAAAACTTGAGAGTTTGTGGGGATTGTCATGAGTTCATAAAGGGTTTATCGAAGATCTT GAGAGTAGTATTTGTGGTGAGAGATGCAAATAGATTTCACAGGTTTGAGGATGGCTTGTGTTCTTGCAGAGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.006G244500.1 pacid=42767562 polypeptide=Potri.006G244500.1.p locus=Potri.006G244500 ID=Potri.006G244500.1.v4.1 annot-version=v4.1 MNRGLFSVLNERQKFANFLRFCSKSLLLDQGMQVHGALVKMGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALV LFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAE SMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG DLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYV YGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	0	1
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	2.82	0.7482
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.018G152300 [exp]	8.36	0.7624
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	11.18	0.7442	Pt-LON_ARA_ARA.2
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	16.43	0.7414
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	18.43	0.7101
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	20.19	0.7439
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	20.73	0.7395
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	21.90	0.7542
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	22.18	0.7600
AT4G32430			Pentatricopeptide repeat (PPR)...		Potri.017G042100 [exp]	23.49	0.7424

Compare expression of checked genes

Potri.006G244500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.