Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41840 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT5G56440 71 / 6e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58900 68 / 3e-12 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G58920 65 / 8e-11 F-box/RNI-like superfamily protein (.1) AT3G59200 64 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G56380 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 62 / 4e-10 F-box/RNI-like superfamily protein (.1) AT1G52650 62 / 8e-10 F-box/RNI-like superfamily protein (.1) AT2G42720 61 / 1e-09 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G58310 61 / 1e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248600 [exp] 844 / 0 AT5G41840 82 / 3e-16 F-box/RNI-like superfamily protein (.1) Potri.017G119200 [exp] 209 / 3e-60 AT3G58900 49 / 8e-06 F-box/RNI-like superfamily protein (.1.2.3.4) Potri.005G252701 [exp] 92 / 2e-21 AT5G02930 52 / 8e-08 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 88 / 2e-18 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 80 / 1e-15 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 77 / 8e-15 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 69 / 4e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.012G099400 [exp] 63 / 3e-10 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 62 / 8e-10 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 57 / 3e-08 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10006726 [exp] 50 / 1e-06 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10024701 [exp] 48 / 1e-06 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10042304 [exp] 47 / 7e-06 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10020292 [exp] 49 / 8e-06 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10027244 [exp] 49 / 9e-06 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 49 / 1e-05 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10018509 [exp] 49 / 1e-05 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10006513 [exp] 45 / 9e-05 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10024695 [exp] 45 / 0.0001 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.006G244700.1 pacid=42769697 polypeptide=Potri.006G244700.1.p locus=Potri.006G244700 ID=Potri.006G244700.1.v4.1 annot-version=v4.1 ATGGAAAGTCCATTTAAGTCGATGGCAATGAGCTCTGATCAAGACACTCGTATCCTTGCTTGTACGCATGATAGATTGAGTGGTCTTCCAGACCAAGTTA TTTATCATATATTCTCCTTCCTTGGAGCTAATGATACTGCACGTCTTGGTTTAGTATCGAAAAGGTTTAAAAAACTGTGCTCCTCTAGCCCTTACTTGAA TTTCGTTGCGGATTTTGATTCTGGTTCTGATCATAGCTGTTTAAGAACAAGGTATACTGATTTCTGCTCTTATGTCGATAAAGTTCTGCGATCGCGCGAA AAGACTGGAGAAGGGTTAATACGTTTGCTTGTTCATTGGTTTTGCAAGCAAAGAAGGTTTGATATTGGAGGGAGTGTTGTTAATTCATGGGTTACTGTTG CTACAAAGTGTGGTGTTGAGGAACTCGACATGCTAGTCCATGTAGATTCATTAAAAGGCTATTCTTTGCCGGATTGTGTTTATAAATGTGAATCTTTGAG GGCTTTGAAATTGAATTTGCAGATGGGAAGGTTCAGTTTTCAAATACTAGGGTTTGACTGGCTCAAGGACTTATGGCTAGATTCAGTAACAATAGGGGAT AAATATTTTGGACAAAGAATTTCGGATCGGTGTAAATGTCTTAAAAGGTTAACTCTTGAGAATGTTGATGGTATCAGTGATCTCACTATGACAAGCTCAT CTCTTGAAGAGCTGGAAATAAGTGATTGCAGATTTCCAAATAGTTTCTTTGATGGGAAATTTAACATATCTTGTTCATCTCTCAAGGTCTTGACAATATC CAGGTGCCAATTTAAAGCCTTGTGGCATGTTAACCTTAATTGTCAATCTCTGGAAAATCTGACAGTCCAGGACTCTGAGTTTGGCAGATTTTTTGTTTGT AAGATAGATTGTGAGTCTCTTGAAACTCTTGAAGTCTGTGGGTCTAATTTCCTTGAAGCATGCCAACTCCTGGTTGATTGTCCATCTCTTATCCATGCCA TGATTAGCAGCTGCAGGTTTGCAAATGTTTGCTTTCTGAACATCAAAAGCTCTTCCCTTGGAGGTTTAACTCTATCCGAGTGCAAATTTAGCTCCCCGGA AATTGGGTCCCAATACTCCAAGCCAAAAAAAGAGATCAAAGTAGGTGCCGGTCCCTGCAGACGCATTATTATGAAGGCTGAAAACCTTGAGACATTGAAT GTAAGCTCATCAGACGCTTATTCATATGAATTTCCTTTGTCGATTTCTGCTCCCAAACTCAAGGATTTATGGTGGACTGGAGATCCCGTAGATTTTAGTT ATCTGAACCAGGGCATGGTGTCGCTATTGAACGCTAGAATTCATATTAAGCCTACTTGTCGGCATAGAAGTGAGGAATCTGATCGTCGGTGCAAGCATTC AAAGAGTTTAATTTATTGTGCTGCCAAGTTCCTTCAGTGTTTAAGTGAAGCCAGATTCTTGAGTATAAACACGTGGCCTATTGAGATTTTCTTTATGCAG AATGATTCTCCGATAGTTTTCAAGAAGCTACAGAACTTGGTTCTACTAACCGATGGTTCATTTGCAGACCAAATCCCAACCATAGCCTCCTTCCTCAGGG GATTGCCTAATCTTAGGAGACTAATAATAAGATGTGAACAGATATCCCATGAACTTTCTGATCCAAATCTGATTAATTTGCTGGGCTTGAATTCAAGGAG CTTTAATCTGACAGGCGTCGGCCAGGATTTGAAAAACGTGAAGATAGAAGCTGTGCAGGGTCAGGCTCAGTCGTGTGTGCAGAATGCTGGGAAGAGAAGA TAA
AA sequence Show only first row Show all	>Potri.006G244700.1 pacid=42769697 polypeptide=Potri.006G244700.1.p locus=Potri.006G244700 ID=Potri.006G244700.1.v4.1 annot-version=v4.1 MESPFKSMAMSSDQDTRILACTHDRLSGLPDQVIYHIFSFLGANDTARLGLVSKRFKKLCSSSPYLNFVADFDSGSDHSCLRTRYTDFCSYVDKVLRSRE KTGEGLIRLLVHWFCKQRRFDIGGSVVNSWVTVATKCGVEELDMLVHVDSLKGYSLPDCVYKCESLRALKLNLQMGRFSFQILGFDWLKDLWLDSVTIGD KYFGQRISDRCKCLKRLTLENVDGISDLTMTSSSLEELEISDCRFPNSFFDGKFNISCSSLKVLTISRCQFKALWHVNLNCQSLENLTVQDSEFGRFFVC KIDCESLETLEVCGSNFLEACQLLVDCPSLIHAMISSCRFANVCFLNIKSSSLGGLTLSECKFSSPEIGSQYSKPKKEIKVGAGPCRRIIMKAENLETLN VSSSDAYSYEFPLSISAPKLKDLWWTGDPVDFSYLNQGMVSLLNARIHIKPTCRHRSEESDRRCKHSKSLIYCAAKFLQCLSEARFLSINTWPIEIFFMQ NDSPIVFKKLQNLVLLTDGSFADQIPTIASFLRGLPNLRRLIIRCEQISHELSDPNLINLLGLNSRSFNLTGVGQDLKNVKIEAVQGQAQSCVQNAGKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	0	1
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	4.89	0.7409
AT3G07870			F-box and associated interacti...		Potri.014G162600 [exp]	7.21	0.7775
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	7.48	0.7390
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.006G124200 [exp]	8.00	0.7221
AT5G47710			Calcium-dependent lipid-bindin...		Potri.006G004600 [exp]	8.94	0.7358
AT3G62210		EDA32	embryo sac development arrest ...		Potri.013G003000 [exp]	9.38	0.7493
AT1G17665			unknown protein		Potri.003G038600 [exp]	12.84	0.7490
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	16.24	0.7508
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	16.70	0.7360	Pt-CNGC.2
AT5G17240		SDG40	SET domain group 40 (.1)		Potri.004G081400 [exp]	19.07	0.6870

Compare expression of checked genes

Potri.006G244700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.